Protein–RNA interactions for Protein: O00148

DDX39A, ATP-dependent RNA helicase DDX39A, humanhuman

Known RBP Predictions only

Length 427 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39AO00148 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
DDX39AO00148 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
DDX39AO00148 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
DDX39AO00148 AL035456.1-201ENST00000456064 1369 ntBASIC18.29■□□□□ 0.52
DDX39AO00148 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC18.29■□□□□ 0.52
DDX39AO00148 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
DDX39AO00148 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
DDX39AO00148 GRAMD4P3-201ENST00000621665 1669 ntBASIC18.28■□□□□ 0.52
DDX39AO00148 CETN4P-206ENST00000642099 2168 ntBASIC18.28■□□□□ 0.52
DDX39AO00148 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
DDX39AO00148 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
DDX39AO00148 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
DDX39AO00148 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
DDX39AO00148 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
DDX39AO00148 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC18.28■□□□□ 0.52
DDX39AO00148 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
DDX39AO00148 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC18.28■□□□□ 0.52
DDX39AO00148 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC18.28■□□□□ 0.52
DDX39AO00148 VMA21-202ENST00000370361 693 ntTSL 5 BASIC18.28■□□□□ 0.52
DDX39AO00148 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
DDX39AO00148 HNRNPA3P1-201ENST00000401429 1139 ntBASIC18.28■□□□□ 0.52
DDX39AO00148 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
DDX39AO00148 HNRNPA1P40-201ENST00000426371 1278 ntBASIC18.28■□□□□ 0.52
DDX39AO00148 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC18.28■□□□□ 0.52
DDX39AO00148 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC18.28■□□□□ 0.52
DDX39AO00148 HNRNPA3P5-201ENST00000455201 833 ntBASIC18.28■□□□□ 0.52
DDX39AO00148 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
DDX39AO00148 RNA5SP421-201ENST00000516864 134 ntBASIC18.28■□□□□ 0.52
DDX39AO00148 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
DDX39AO00148 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
DDX39AO00148 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC18.28■□□□□ 0.52
DDX39AO00148 AL133215.2-201ENST00000609242 977 ntBASIC18.28■□□□□ 0.52
DDX39AO00148 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
DDX39AO00148 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
DDX39AO00148 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
DDX39AO00148 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
DDX39AO00148 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
DDX39AO00148 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC18.28■□□□□ 0.52
DDX39AO00148 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC18.28■□□□□ 0.52
DDX39AO00148 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
DDX39AO00148 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
DDX39AO00148 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
DDX39AO00148 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
DDX39AO00148 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC18.27■□□□□ 0.52
DDX39AO00148 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC18.27■□□□□ 0.52
DDX39AO00148 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
DDX39AO00148 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC18.27■□□□□ 0.52
DDX39AO00148 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
DDX39AO00148 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
DDX39AO00148 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC18.27■□□□□ 0.52
DDX39AO00148 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
DDX39AO00148 RPL37AP1-201ENST00000412502 279 ntBASIC18.27■□□□□ 0.52
DDX39AO00148 AC241585.1-201ENST00000433527 519 ntBASIC18.27■□□□□ 0.52
DDX39AO00148 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC18.27■□□□□ 0.52
DDX39AO00148 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
DDX39AO00148 GPER1-207ENST00000619052 571 ntTSL 2 BASIC18.27■□□□□ 0.52
DDX39AO00148 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
DDX39AO00148 AL590560.3-201ENST00000623350 461 ntBASIC18.27■□□□□ 0.52
DDX39AO00148 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
DDX39AO00148 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
DDX39AO00148 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
DDX39AO00148 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
DDX39AO00148 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
DDX39AO00148 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
DDX39AO00148 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC18.27■□□□□ 0.51
DDX39AO00148 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
DDX39AO00148 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC18.27■□□□□ 0.51
DDX39AO00148 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC18.27■□□□□ 0.51
DDX39AO00148 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
DDX39AO00148 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
DDX39AO00148 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
DDX39AO00148 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC18.26■□□□□ 0.51
DDX39AO00148 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
DDX39AO00148 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
DDX39AO00148 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
DDX39AO00148 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC18.26■□□□□ 0.51
DDX39AO00148 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
DDX39AO00148 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC18.26■□□□□ 0.51
DDX39AO00148 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC18.26■□□□□ 0.51
DDX39AO00148 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
DDX39AO00148 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
DDX39AO00148 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
DDX39AO00148 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
DDX39AO00148 RBM39-205ENST00000397370 612 ntTSL 2 BASIC18.26■□□□□ 0.51
DDX39AO00148 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
DDX39AO00148 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
DDX39AO00148 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC18.26■□□□□ 0.51
DDX39AO00148 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC18.26■□□□□ 0.51
DDX39AO00148 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
DDX39AO00148 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC18.26■□□□□ 0.51
DDX39AO00148 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC18.26■□□□□ 0.51
DDX39AO00148 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC18.26■□□□□ 0.51
DDX39AO00148 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
DDX39AO00148 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC18.26■□□□□ 0.51
DDX39AO00148 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
DDX39AO00148 MIR4745-201ENST00000577608 62 ntBASIC18.26■□□□□ 0.51
DDX39AO00148 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC18.26■□□□□ 0.51
DDX39AO00148 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
DDX39AO00148 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC18.26■□□□□ 0.51
DDX39AO00148 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 1453.6 ms