Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRIM49D1C9J1S8 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC16.36■□□□□ 0.21
TRIM49D1C9J1S8 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC16.36■□□□□ 0.21
TRIM49D1C9J1S8 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRIM49D1C9J1S8 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
TRIM49D1C9J1S8 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRIM49D1C9J1S8 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
TRIM49D1C9J1S8 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
TRIM49D1C9J1S8 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC16.36■□□□□ 0.21
TRIM49D1C9J1S8 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
TRIM49D1C9J1S8 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRIM49D1C9J1S8 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRIM49D1C9J1S8 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC16.36■□□□□ 0.21
TRIM49D1C9J1S8 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRIM49D1C9J1S8 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC16.35■□□□□ 0.21
TRIM49D1C9J1S8 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
TRIM49D1C9J1S8 SSR4P1-203ENST00000599569 2260 ntBASIC16.35■□□□□ 0.21
TRIM49D1C9J1S8 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM49D1C9J1S8 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC16.35■□□□□ 0.21
TRIM49D1C9J1S8 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
TRIM49D1C9J1S8 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM49D1C9J1S8 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
TRIM49D1C9J1S8 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM49D1C9J1S8 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC16.35■□□□□ 0.21
TRIM49D1C9J1S8 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM49D1C9J1S8 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM49D1C9J1S8 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM49D1C9J1S8 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM49D1C9J1S8 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
TRIM49D1C9J1S8 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC16.35■□□□□ 0.21
TRIM49D1C9J1S8 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM49D1C9J1S8 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC16.35■□□□□ 0.21
TRIM49D1C9J1S8 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC16.35■□□□□ 0.21
TRIM49D1C9J1S8 CD99-202ENST00000381180 530 ntTSL 2 BASIC16.35■□□□□ 0.21
TRIM49D1C9J1S8 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC16.35■□□□□ 0.21
TRIM49D1C9J1S8 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM49D1C9J1S8 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC16.35■□□□□ 0.21
TRIM49D1C9J1S8 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM49D1C9J1S8 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM49D1C9J1S8 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC16.35■□□□□ 0.21
TRIM49D1C9J1S8 CIPC-205ENST00000555437 566 ntTSL 3 BASIC16.35■□□□□ 0.21
TRIM49D1C9J1S8 ETFA-208ENST00000559602 792 ntTSL 3 BASIC16.35■□□□□ 0.21
TRIM49D1C9J1S8 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC16.35■□□□□ 0.21
TRIM49D1C9J1S8 AL445228.2-201ENST00000605589 952 ntBASIC16.35■□□□□ 0.21
TRIM49D1C9J1S8 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC16.35■□□□□ 0.21
TRIM49D1C9J1S8 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC16.35■□□□□ 0.21
TRIM49D1C9J1S8 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM49D1C9J1S8 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM49D1C9J1S8 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC16.35■□□□□ 0.21
TRIM49D1C9J1S8 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM49D1C9J1S8 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM49D1C9J1S8 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC16.35■□□□□ 0.21
TRIM49D1C9J1S8 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC16.35■□□□□ 0.21
TRIM49D1C9J1S8 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM49D1C9J1S8 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC16.35■□□□□ 0.21
TRIM49D1C9J1S8 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM49D1C9J1S8 AC136621.1-201ENST00000624017 2304 ntBASIC16.35■□□□□ 0.21
TRIM49D1C9J1S8 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC16.35■□□□□ 0.21
TRIM49D1C9J1S8 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC16.35■□□□□ 0.21
TRIM49D1C9J1S8 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM49D1C9J1S8 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM49D1C9J1S8 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM49D1C9J1S8 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM49D1C9J1S8 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM49D1C9J1S8 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC16.35■□□□□ 0.21
TRIM49D1C9J1S8 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM49D1C9J1S8 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM49D1C9J1S8 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM49D1C9J1S8 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
TRIM49D1C9J1S8 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC16.34■□□□□ 0.21
TRIM49D1C9J1S8 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRIM49D1C9J1S8 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC16.34■□□□□ 0.21
TRIM49D1C9J1S8 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRIM49D1C9J1S8 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRIM49D1C9J1S8 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
TRIM49D1C9J1S8 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC16.34■□□□□ 0.21
TRIM49D1C9J1S8 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC16.34■□□□□ 0.21
TRIM49D1C9J1S8 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRIM49D1C9J1S8 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC16.34■□□□□ 0.21
TRIM49D1C9J1S8 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC16.34■□□□□ 0.21
TRIM49D1C9J1S8 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRIM49D1C9J1S8 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
TRIM49D1C9J1S8 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC16.34■□□□□ 0.21
TRIM49D1C9J1S8 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC16.34■□□□□ 0.21
TRIM49D1C9J1S8 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC16.34■□□□□ 0.21
TRIM49D1C9J1S8 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRIM49D1C9J1S8 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC16.34■□□□□ 0.21
TRIM49D1C9J1S8 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
TRIM49D1C9J1S8 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC16.34■□□□□ 0.21
TRIM49D1C9J1S8 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRIM49D1C9J1S8 TNRC18P2-201ENST00000417666 2714 ntBASIC16.34■□□□□ 0.21
TRIM49D1C9J1S8 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRIM49D1C9J1S8 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRIM49D1C9J1S8 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
TRIM49D1C9J1S8 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
TRIM49D1C9J1S8 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRIM49D1C9J1S8 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC16.34■□□□□ 0.21
TRIM49D1C9J1S8 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
TRIM49D1C9J1S8 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
TRIM49D1C9J1S8 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC16.33■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms