Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
SHROOM4Q9ULL8 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
SHROOM4Q9ULL8 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
SHROOM4Q9ULL8 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
SHROOM4Q9ULL8 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
SHROOM4Q9ULL8 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC30.63■■■□□ 2.49
SHROOM4Q9ULL8 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC30.63■■■□□ 2.49
SHROOM4Q9ULL8 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC30.63■■■□□ 2.49
SHROOM4Q9ULL8 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
SHROOM4Q9ULL8 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC30.63■■■□□ 2.49
SHROOM4Q9ULL8 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC30.63■■■□□ 2.49
SHROOM4Q9ULL8 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC30.63■■■□□ 2.49
SHROOM4Q9ULL8 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC30.63■■■□□ 2.49
SHROOM4Q9ULL8 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC30.63■■■□□ 2.49
SHROOM4Q9ULL8 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC30.63■■■□□ 2.49
SHROOM4Q9ULL8 KLF2P4-201ENST00000451959 1225 ntBASIC30.63■■■□□ 2.49
SHROOM4Q9ULL8 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
SHROOM4Q9ULL8 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC30.63■■■□□ 2.49
SHROOM4Q9ULL8 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
SHROOM4Q9ULL8 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC30.63■■■□□ 2.49
SHROOM4Q9ULL8 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
SHROOM4Q9ULL8 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC30.63■■■□□ 2.49
SHROOM4Q9ULL8 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC30.63■■■□□ 2.49
SHROOM4Q9ULL8 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
SHROOM4Q9ULL8 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
SHROOM4Q9ULL8 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
SHROOM4Q9ULL8 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
SHROOM4Q9ULL8 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC30.62■■■□□ 2.49
SHROOM4Q9ULL8 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC30.62■■■□□ 2.49
SHROOM4Q9ULL8 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC30.62■■■□□ 2.49
SHROOM4Q9ULL8 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
SHROOM4Q9ULL8 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC30.62■■■□□ 2.49
SHROOM4Q9ULL8 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC30.62■■■□□ 2.49
SHROOM4Q9ULL8 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC30.62■■■□□ 2.49
SHROOM4Q9ULL8 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC30.62■■■□□ 2.49
SHROOM4Q9ULL8 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC30.62■■■□□ 2.49
SHROOM4Q9ULL8 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
SHROOM4Q9ULL8 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
SHROOM4Q9ULL8 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
SHROOM4Q9ULL8 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC30.62■■■□□ 2.49
SHROOM4Q9ULL8 AL162726.2-201ENST00000438986 1017 ntBASIC30.62■■■□□ 2.49
SHROOM4Q9ULL8 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC30.62■■■□□ 2.49
SHROOM4Q9ULL8 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC30.62■■■□□ 2.49
SHROOM4Q9ULL8 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
SHROOM4Q9ULL8 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC30.62■■■□□ 2.49
SHROOM4Q9ULL8 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
SHROOM4Q9ULL8 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
SHROOM4Q9ULL8 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
SHROOM4Q9ULL8 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC30.61■■■□□ 2.49
SHROOM4Q9ULL8 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC30.61■■■□□ 2.49
SHROOM4Q9ULL8 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC30.61■■■□□ 2.49
SHROOM4Q9ULL8 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
SHROOM4Q9ULL8 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
SHROOM4Q9ULL8 GPAA1P2-201ENST00000417923 928 ntBASIC30.61■■■□□ 2.49
SHROOM4Q9ULL8 FAM21FP-201ENST00000426241 1131 ntBASIC30.61■■■□□ 2.49
SHROOM4Q9ULL8 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC30.61■■■□□ 2.49
SHROOM4Q9ULL8 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC30.61■■■□□ 2.49
SHROOM4Q9ULL8 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC30.61■■■□□ 2.49
SHROOM4Q9ULL8 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
SHROOM4Q9ULL8 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC30.61■■■□□ 2.49
SHROOM4Q9ULL8 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC30.61■■■□□ 2.49
SHROOM4Q9ULL8 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
SHROOM4Q9ULL8 AC106886.4-201ENST00000623557 2502 ntBASIC30.61■■■□□ 2.49
SHROOM4Q9ULL8 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC30.61■■■□□ 2.49
SHROOM4Q9ULL8 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC30.6■■■□□ 2.49
SHROOM4Q9ULL8 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC30.6■■■□□ 2.49
SHROOM4Q9ULL8 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC30.6■■■□□ 2.49
SHROOM4Q9ULL8 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
SHROOM4Q9ULL8 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC30.6■■■□□ 2.49
SHROOM4Q9ULL8 USB1-202ENST00000423271 1217 ntTSL 2 BASIC30.6■■■□□ 2.49
SHROOM4Q9ULL8 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC30.6■■■□□ 2.49
SHROOM4Q9ULL8 CSF2RBP1-201ENST00000447905 391 ntBASIC30.6■■■□□ 2.49
SHROOM4Q9ULL8 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
SHROOM4Q9ULL8 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC30.6■■■□□ 2.49
SHROOM4Q9ULL8 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC30.6■■■□□ 2.49
SHROOM4Q9ULL8 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC30.6■■■□□ 2.49
SHROOM4Q9ULL8 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC30.6■■■□□ 2.49
SHROOM4Q9ULL8 AL136982.4-201ENST00000437689 1740 ntBASIC30.6■■■□□ 2.49
SHROOM4Q9ULL8 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC30.6■■■□□ 2.49
SHROOM4Q9ULL8 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC30.6■■■□□ 2.49
SHROOM4Q9ULL8 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC30.6■■■□□ 2.49
SHROOM4Q9ULL8 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC30.59■■■□□ 2.49
SHROOM4Q9ULL8 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC30.59■■■□□ 2.49
SHROOM4Q9ULL8 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
SHROOM4Q9ULL8 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC30.59■■■□□ 2.49
SHROOM4Q9ULL8 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
SHROOM4Q9ULL8 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC30.59■■■□□ 2.49
SHROOM4Q9ULL8 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
SHROOM4Q9ULL8 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC30.59■■■□□ 2.49
SHROOM4Q9ULL8 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
SHROOM4Q9ULL8 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC30.59■■■□□ 2.49
SHROOM4Q9ULL8 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC30.59■■■□□ 2.49
SHROOM4Q9ULL8 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC30.59■■■□□ 2.49
SHROOM4Q9ULL8 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC30.59■■■□□ 2.49
SHROOM4Q9ULL8 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC30.59■■■□□ 2.49
SHROOM4Q9ULL8 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC30.59■■■□□ 2.49
SHROOM4Q9ULL8 AC005622.1-201ENST00000636801 1703 ntBASIC30.59■■■□□ 2.49
SHROOM4Q9ULL8 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
SHROOM4Q9ULL8 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC30.59■■■□□ 2.49
SHROOM4Q9ULL8 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms