Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC17.26■□□□□ 0.35
PAAF1Q9BRP4 AC008494.3-201ENST00000606615 944 ntBASIC17.26■□□□□ 0.35
PAAF1Q9BRP4 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC17.26■□□□□ 0.35
PAAF1Q9BRP4 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PAAF1Q9BRP4 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
PAAF1Q9BRP4 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
PAAF1Q9BRP4 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PAAF1Q9BRP4 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PAAF1Q9BRP4 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PAAF1Q9BRP4 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PAAF1Q9BRP4 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PAAF1Q9BRP4 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PAAF1Q9BRP4 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PAAF1Q9BRP4 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
PAAF1Q9BRP4 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC17.26■□□□□ 0.35
PAAF1Q9BRP4 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PAAF1Q9BRP4 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC17.26■□□□□ 0.35
PAAF1Q9BRP4 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PAAF1Q9BRP4 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC17.25■□□□□ 0.35
PAAF1Q9BRP4 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PAAF1Q9BRP4 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
PAAF1Q9BRP4 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PAAF1Q9BRP4 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
PAAF1Q9BRP4 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC17.25■□□□□ 0.35
PAAF1Q9BRP4 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC17.25■□□□□ 0.35
PAAF1Q9BRP4 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
PAAF1Q9BRP4 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PAAF1Q9BRP4 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
PAAF1Q9BRP4 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PAAF1Q9BRP4 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PAAF1Q9BRP4 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
PAAF1Q9BRP4 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC17.25■□□□□ 0.35
PAAF1Q9BRP4 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PAAF1Q9BRP4 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PAAF1Q9BRP4 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
PAAF1Q9BRP4 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
PAAF1Q9BRP4 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC17.25■□□□□ 0.35
PAAF1Q9BRP4 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC17.25■□□□□ 0.35
PAAF1Q9BRP4 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
PAAF1Q9BRP4 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC17.25■□□□□ 0.35
PAAF1Q9BRP4 FTH1-202ENST00000526640 786 ntTSL 2 BASIC17.25■□□□□ 0.35
PAAF1Q9BRP4 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC17.25■□□□□ 0.35
PAAF1Q9BRP4 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC17.25■□□□□ 0.35
PAAF1Q9BRP4 AL358472.5-202ENST00000641448 1267 ntBASIC17.25■□□□□ 0.35
PAAF1Q9BRP4 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PAAF1Q9BRP4 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC17.25■□□□□ 0.35
PAAF1Q9BRP4 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC17.25■□□□□ 0.35
PAAF1Q9BRP4 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC17.25■□□□□ 0.35
PAAF1Q9BRP4 SLC7A15P-201ENST00000424028 1363 ntBASIC17.25■□□□□ 0.35
PAAF1Q9BRP4 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
PAAF1Q9BRP4 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
PAAF1Q9BRP4 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC17.25■□□□□ 0.35
PAAF1Q9BRP4 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC17.25■□□□□ 0.35
PAAF1Q9BRP4 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
PAAF1Q9BRP4 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC17.24■□□□□ 0.35
PAAF1Q9BRP4 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PAAF1Q9BRP4 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
PAAF1Q9BRP4 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PAAF1Q9BRP4 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PAAF1Q9BRP4 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PAAF1Q9BRP4 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
PAAF1Q9BRP4 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PAAF1Q9BRP4 AZGP1P1-201ENST00000411909 902 ntBASIC17.24■□□□□ 0.35
PAAF1Q9BRP4 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC17.24■□□□□ 0.35
PAAF1Q9BRP4 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC17.24■□□□□ 0.35
PAAF1Q9BRP4 CR383656.12-201ENST00000549567 513 ntBASIC17.24■□□□□ 0.35
PAAF1Q9BRP4 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC17.24■□□□□ 0.35
PAAF1Q9BRP4 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC17.24■□□□□ 0.35
PAAF1Q9BRP4 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PAAF1Q9BRP4 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PAAF1Q9BRP4 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC17.24■□□□□ 0.35
PAAF1Q9BRP4 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PAAF1Q9BRP4 CES3-203ENST00000543856 3178 ntTSL 2 BASIC17.24■□□□□ 0.35
PAAF1Q9BRP4 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
PAAF1Q9BRP4 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC17.24■□□□□ 0.35
PAAF1Q9BRP4 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC17.24■□□□□ 0.35
PAAF1Q9BRP4 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC17.24■□□□□ 0.35
PAAF1Q9BRP4 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC17.24■□□□□ 0.35
PAAF1Q9BRP4 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
PAAF1Q9BRP4 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC17.24■□□□□ 0.35
PAAF1Q9BRP4 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
PAAF1Q9BRP4 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
PAAF1Q9BRP4 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PAAF1Q9BRP4 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
PAAF1Q9BRP4 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PAAF1Q9BRP4 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC17.24■□□□□ 0.35
PAAF1Q9BRP4 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
PAAF1Q9BRP4 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PAAF1Q9BRP4 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
PAAF1Q9BRP4 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
PAAF1Q9BRP4 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC17.23■□□□□ 0.35
PAAF1Q9BRP4 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PAAF1Q9BRP4 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC17.23■□□□□ 0.35
PAAF1Q9BRP4 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PAAF1Q9BRP4 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PAAF1Q9BRP4 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PAAF1Q9BRP4 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PAAF1Q9BRP4 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
PAAF1Q9BRP4 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PAAF1Q9BRP4 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms