Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CDX2Q99626 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CDX2Q99626 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CDX2Q99626 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CDX2Q99626 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC16.7■□□□□ 0.26
CDX2Q99626 RN7SL8P-201ENST00000461771 266 ntBASIC16.7■□□□□ 0.26
CDX2Q99626 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC16.7■□□□□ 0.26
CDX2Q99626 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC16.7■□□□□ 0.26
CDX2Q99626 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CDX2Q99626 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC16.7■□□□□ 0.26
CDX2Q99626 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC16.7■□□□□ 0.26
CDX2Q99626 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC16.7■□□□□ 0.26
CDX2Q99626 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CDX2Q99626 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC16.7■□□□□ 0.26
CDX2Q99626 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CDX2Q99626 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
CDX2Q99626 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CDX2Q99626 AF254983.2-201ENST00000612331 135 ntBASIC16.7■□□□□ 0.26
CDX2Q99626 AP005019.2-201ENST00000615104 511 ntBASIC16.7■□□□□ 0.26
CDX2Q99626 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC16.7■□□□□ 0.26
CDX2Q99626 ETV2-208ENST00000621247 941 ntTSL 5 BASIC16.7■□□□□ 0.26
CDX2Q99626 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CDX2Q99626 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC16.7■□□□□ 0.26
CDX2Q99626 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC16.7■□□□□ 0.26
CDX2Q99626 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CDX2Q99626 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC16.7■□□□□ 0.26
CDX2Q99626 ZBTB45P2-201ENST00000452245 1531 ntBASIC16.7■□□□□ 0.26
CDX2Q99626 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CDX2Q99626 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CDX2Q99626 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC16.69■□□□□ 0.26
CDX2Q99626 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
CDX2Q99626 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CDX2Q99626 SMS-201ENST00000379404 1174 ntTSL 3 BASIC16.69■□□□□ 0.26
CDX2Q99626 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
CDX2Q99626 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
CDX2Q99626 AC004987.2-201ENST00000395959 1148 ntBASIC16.69■□□□□ 0.26
CDX2Q99626 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CDX2Q99626 FGFR3P1-201ENST00000449999 601 ntBASIC16.69■□□□□ 0.26
CDX2Q99626 RN7SL181P-201ENST00000462921 277 ntBASIC16.69■□□□□ 0.26
CDX2Q99626 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC16.69■□□□□ 0.26
CDX2Q99626 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
CDX2Q99626 AC022217.1-201ENST00000521069 738 ntBASIC16.69■□□□□ 0.26
CDX2Q99626 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC16.69■□□□□ 0.26
CDX2Q99626 AC141586.1-203ENST00000567242 366 ntBASIC16.69■□□□□ 0.26
CDX2Q99626 WDR7-208ENST00000589935 544 ntTSL 4 BASIC16.69■□□□□ 0.26
CDX2Q99626 AL645939.5-201ENST00000606834 243 ntBASIC16.69■□□□□ 0.26
CDX2Q99626 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC16.69■□□□□ 0.26
CDX2Q99626 AP001065.2-201ENST00000617205 644 ntBASIC16.69■□□□□ 0.26
CDX2Q99626 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC16.69■□□□□ 0.26
CDX2Q99626 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
CDX2Q99626 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC16.69■□□□□ 0.26
CDX2Q99626 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CDX2Q99626 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CDX2Q99626 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC16.69■□□□□ 0.26
CDX2Q99626 AL354989.2-201ENST00000435838 1540 ntBASIC16.69■□□□□ 0.26
CDX2Q99626 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
CDX2Q99626 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC16.69■□□□□ 0.26
CDX2Q99626 AC135050.7-201ENST00000624508 2218 ntBASIC16.69■□□□□ 0.26
CDX2Q99626 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CDX2Q99626 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CDX2Q99626 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CDX2Q99626 GPAA1P2-202ENST00000606848 1787 ntBASIC16.69■□□□□ 0.26
CDX2Q99626 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
CDX2Q99626 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC16.69■□□□□ 0.26
CDX2Q99626 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CDX2Q99626 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
CDX2Q99626 MADD-208ENST00000405573 1823 ntTSL 5 BASIC16.68■□□□□ 0.26
CDX2Q99626 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CDX2Q99626 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CDX2Q99626 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC16.68■□□□□ 0.26
CDX2Q99626 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC16.68■□□□□ 0.26
CDX2Q99626 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
CDX2Q99626 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC16.68■□□□□ 0.26
CDX2Q99626 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CDX2Q99626 U82695.1-201ENST00000635752 1889 ntBASIC16.68■□□□□ 0.26
CDX2Q99626 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CDX2Q99626 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC16.68■□□□□ 0.26
CDX2Q99626 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CDX2Q99626 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CDX2Q99626 ACTG1P2-201ENST00000415776 1125 ntBASIC16.68■□□□□ 0.26
CDX2Q99626 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC16.68■□□□□ 0.26
CDX2Q99626 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC16.68■□□□□ 0.26
CDX2Q99626 ACTG1P11-201ENST00000425411 1125 ntBASIC16.68■□□□□ 0.26
CDX2Q99626 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC16.68■□□□□ 0.26
CDX2Q99626 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC16.68■□□□□ 0.26
CDX2Q99626 EEF1DP4-201ENST00000446006 880 ntBASIC16.68■□□□□ 0.26
CDX2Q99626 NOC2LP1-201ENST00000450578 752 ntBASIC16.68■□□□□ 0.26
CDX2Q99626 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC16.68■□□□□ 0.26
CDX2Q99626 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CDX2Q99626 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC16.68■□□□□ 0.26
CDX2Q99626 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC16.68■□□□□ 0.26
CDX2Q99626 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC16.68■□□□□ 0.26
CDX2Q99626 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC16.68■□□□□ 0.26
CDX2Q99626 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC16.68■□□□□ 0.26
CDX2Q99626 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC16.68■□□□□ 0.26
CDX2Q99626 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC16.68■□□□□ 0.26
CDX2Q99626 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC16.68■□□□□ 0.26
CDX2Q99626 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
CDX2Q99626 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC16.68■□□□□ 0.26
CDX2Q99626 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms