Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
CPNE4Q96A23 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
CPNE4Q96A23 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC14.66□□□□□ -0.06
CPNE4Q96A23 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC14.66□□□□□ -0.06
CPNE4Q96A23 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CPNE4Q96A23 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CPNE4Q96A23 LBH-203ENST00000404397 543 ntTSL 4 BASIC14.66□□□□□ -0.06
CPNE4Q96A23 FAM58DP-201ENST00000428076 619 ntBASIC14.66□□□□□ -0.06
CPNE4Q96A23 METTL21AP1-201ENST00000438852 635 ntBASIC14.66□□□□□ -0.06
CPNE4Q96A23 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CPNE4Q96A23 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CPNE4Q96A23 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CPNE4Q96A23 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
CPNE4Q96A23 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC14.66□□□□□ -0.06
CPNE4Q96A23 AC025678.2-201ENST00000562061 970 ntBASIC14.66□□□□□ -0.06
CPNE4Q96A23 AC004449.1-201ENST00000564240 433 ntBASIC14.66□□□□□ -0.06
CPNE4Q96A23 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CPNE4Q96A23 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC14.66□□□□□ -0.06
CPNE4Q96A23 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC14.66□□□□□ -0.06
CPNE4Q96A23 AP001059.3-201ENST00000619053 235 ntBASIC14.66□□□□□ -0.06
CPNE4Q96A23 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC14.66□□□□□ -0.06
CPNE4Q96A23 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
CPNE4Q96A23 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CPNE4Q96A23 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
CPNE4Q96A23 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC14.66□□□□□ -0.06
CPNE4Q96A23 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC14.66□□□□□ -0.06
CPNE4Q96A23 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
CPNE4Q96A23 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC14.66□□□□□ -0.06
CPNE4Q96A23 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
CPNE4Q96A23 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC14.66□□□□□ -0.06
CPNE4Q96A23 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CPNE4Q96A23 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC14.65□□□□□ -0.06
CPNE4Q96A23 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CPNE4Q96A23 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC14.65□□□□□ -0.06
CPNE4Q96A23 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CPNE4Q96A23 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
CPNE4Q96A23 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC14.65□□□□□ -0.06
CPNE4Q96A23 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
CPNE4Q96A23 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CPNE4Q96A23 CA12-203ENST00000422263 2556 ntTSL 2 BASIC14.65□□□□□ -0.06
CPNE4Q96A23 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CPNE4Q96A23 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CPNE4Q96A23 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC14.65□□□□□ -0.06
CPNE4Q96A23 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CPNE4Q96A23 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CPNE4Q96A23 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
CPNE4Q96A23 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CPNE4Q96A23 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CPNE4Q96A23 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
CPNE4Q96A23 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CPNE4Q96A23 FAM220BP-201ENST00000377689 816 ntBASIC14.65□□□□□ -0.06
CPNE4Q96A23 SPDYE7P-202ENST00000420373 878 ntBASIC14.65□□□□□ -0.06
CPNE4Q96A23 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC14.65□□□□□ -0.06
CPNE4Q96A23 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC14.65□□□□□ -0.06
CPNE4Q96A23 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CPNE4Q96A23 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC14.65□□□□□ -0.06
CPNE4Q96A23 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CPNE4Q96A23 ALG1L8P-201ENST00000533887 760 ntBASIC14.65□□□□□ -0.06
CPNE4Q96A23 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC14.65□□□□□ -0.06
CPNE4Q96A23 AC024267.1-201ENST00000582320 895 ntBASIC14.65□□□□□ -0.06
CPNE4Q96A23 AL365330.1-201ENST00000607459 531 ntBASIC14.65□□□□□ -0.06
CPNE4Q96A23 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CPNE4Q96A23 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CPNE4Q96A23 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
CPNE4Q96A23 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CPNE4Q96A23 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CPNE4Q96A23 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC14.65□□□□□ -0.06
CPNE4Q96A23 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CPNE4Q96A23 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CPNE4Q96A23 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CPNE4Q96A23 AL589702.1-201ENST00000641229 1509 ntBASIC14.65□□□□□ -0.06
CPNE4Q96A23 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
CPNE4Q96A23 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC14.65□□□□□ -0.06
CPNE4Q96A23 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CPNE4Q96A23 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CPNE4Q96A23 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CPNE4Q96A23 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CPNE4Q96A23 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CPNE4Q96A23 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CPNE4Q96A23 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
CPNE4Q96A23 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC14.64□□□□□ -0.07
CPNE4Q96A23 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC14.64□□□□□ -0.07
CPNE4Q96A23 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC14.64□□□□□ -0.07
CPNE4Q96A23 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC14.64□□□□□ -0.07
CPNE4Q96A23 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CPNE4Q96A23 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CPNE4Q96A23 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CPNE4Q96A23 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
CPNE4Q96A23 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
CPNE4Q96A23 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CPNE4Q96A23 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
CPNE4Q96A23 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CPNE4Q96A23 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
CPNE4Q96A23 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
CPNE4Q96A23 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CPNE4Q96A23 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CPNE4Q96A23 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CPNE4Q96A23 PON3-203ENST00000427422 894 ntTSL 3 BASIC14.64□□□□□ -0.07
CPNE4Q96A23 GPS2P2-201ENST00000430745 888 ntBASIC14.64□□□□□ -0.07
CPNE4Q96A23 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC14.64□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 58.5 ms