Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS52Q8N1B4 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC17.69■□□□□ 0.42
VPS52Q8N1B4 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VPS52Q8N1B4 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS52Q8N1B4 AC011270.2-201ENST00000624293 2550 ntBASIC17.69■□□□□ 0.42
VPS52Q8N1B4 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS52Q8N1B4 AC005915.1-201ENST00000624912 2018 ntBASIC17.69■□□□□ 0.42
VPS52Q8N1B4 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
VPS52Q8N1B4 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS52Q8N1B4 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VPS52Q8N1B4 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS52Q8N1B4 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS52Q8N1B4 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS52Q8N1B4 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS52Q8N1B4 AC105020.1-201ENST00000435356 2205 ntBASIC17.68■□□□□ 0.42
VPS52Q8N1B4 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS52Q8N1B4 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VPS52Q8N1B4 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
VPS52Q8N1B4 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC17.68■□□□□ 0.42
VPS52Q8N1B4 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS52Q8N1B4 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
VPS52Q8N1B4 CICP6-201ENST00000457191 2729 ntBASIC17.68■□□□□ 0.42
VPS52Q8N1B4 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC17.68■□□□□ 0.42
VPS52Q8N1B4 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC17.68■□□□□ 0.42
VPS52Q8N1B4 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS52Q8N1B4 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS52Q8N1B4 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC17.68■□□□□ 0.42
VPS52Q8N1B4 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC17.68■□□□□ 0.42
VPS52Q8N1B4 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS52Q8N1B4 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC17.68■□□□□ 0.42
VPS52Q8N1B4 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC17.68■□□□□ 0.42
VPS52Q8N1B4 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC17.68■□□□□ 0.42
VPS52Q8N1B4 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC17.68■□□□□ 0.42
VPS52Q8N1B4 LY6E-204ENST00000519546 971 ntTSL 2 BASIC17.68■□□□□ 0.42
VPS52Q8N1B4 COQ6-210ENST00000554920 649 ntTSL 3 BASIC17.68■□□□□ 0.42
VPS52Q8N1B4 MPI-209ENST00000564003 1195 ntTSL 2 BASIC17.68■□□□□ 0.42
VPS52Q8N1B4 COQ9-214ENST00000567933 882 ntTSL 3 BASIC17.68■□□□□ 0.42
VPS52Q8N1B4 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC17.68■□□□□ 0.42
VPS52Q8N1B4 GPER1-207ENST00000619052 571 ntTSL 2 BASIC17.68■□□□□ 0.42
VPS52Q8N1B4 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS52Q8N1B4 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC17.68■□□□□ 0.42
VPS52Q8N1B4 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS52Q8N1B4 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC17.68■□□□□ 0.42
VPS52Q8N1B4 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC17.68■□□□□ 0.42
VPS52Q8N1B4 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS52Q8N1B4 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS52Q8N1B4 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC17.68■□□□□ 0.42
VPS52Q8N1B4 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC17.68■□□□□ 0.42
VPS52Q8N1B4 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC17.68■□□□□ 0.42
VPS52Q8N1B4 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS52Q8N1B4 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC17.68■□□□□ 0.42
VPS52Q8N1B4 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS52Q8N1B4 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
VPS52Q8N1B4 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC17.67■□□□□ 0.42
VPS52Q8N1B4 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
VPS52Q8N1B4 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC17.67■□□□□ 0.42
VPS52Q8N1B4 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VPS52Q8N1B4 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
VPS52Q8N1B4 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS52Q8N1B4 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS52Q8N1B4 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS52Q8N1B4 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS52Q8N1B4 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VPS52Q8N1B4 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS52Q8N1B4 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC17.67■□□□□ 0.42
VPS52Q8N1B4 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS52Q8N1B4 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC17.67■□□□□ 0.42
VPS52Q8N1B4 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VPS52Q8N1B4 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS52Q8N1B4 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS52Q8N1B4 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC17.67■□□□□ 0.42
VPS52Q8N1B4 WDR53-204ENST00000433160 887 ntTSL 5 BASIC17.67■□□□□ 0.42
VPS52Q8N1B4 HLA-V-204ENST00000476601 1289 ntBASIC17.67■□□□□ 0.42
VPS52Q8N1B4 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC17.67■□□□□ 0.42
VPS52Q8N1B4 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC17.67■□□□□ 0.42
VPS52Q8N1B4 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VPS52Q8N1B4 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VPS52Q8N1B4 AC124947.2-201ENST00000547118 1133 ntBASIC17.67■□□□□ 0.42
VPS52Q8N1B4 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC17.67■□□□□ 0.42
VPS52Q8N1B4 AC004233.3-201ENST00000607794 1269 ntBASIC17.67■□□□□ 0.42
VPS52Q8N1B4 AL662799.1-202ENST00000614205 422 ntBASIC17.67■□□□□ 0.42
VPS52Q8N1B4 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC17.67■□□□□ 0.42
VPS52Q8N1B4 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC17.67■□□□□ 0.42
VPS52Q8N1B4 AL358472.5-202ENST00000641448 1267 ntBASIC17.67■□□□□ 0.42
VPS52Q8N1B4 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS52Q8N1B4 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VPS52Q8N1B4 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS52Q8N1B4 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VPS52Q8N1B4 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VPS52Q8N1B4 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
VPS52Q8N1B4 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
VPS52Q8N1B4 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VPS52Q8N1B4 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC17.67■□□□□ 0.42
VPS52Q8N1B4 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS52Q8N1B4 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS52Q8N1B4 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS52Q8N1B4 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS52Q8N1B4 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VPS52Q8N1B4 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC17.67■□□□□ 0.42
VPS52Q8N1B4 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms