Protein–RNA interactions for Protein: Q68DV7

RNF43, E3 ubiquitin-protein ligase RNF43, humanhuman

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF43Q68DV7 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
RNF43Q68DV7 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC17.13■□□□□ 0.33
RNF43Q68DV7 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
RNF43Q68DV7 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC17.13■□□□□ 0.33
RNF43Q68DV7 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
RNF43Q68DV7 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC17.13■□□□□ 0.33
RNF43Q68DV7 AC092364.2-201ENST00000596710 2692 ntBASIC17.13■□□□□ 0.33
RNF43Q68DV7 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
RNF43Q68DV7 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC17.13■□□□□ 0.33
RNF43Q68DV7 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
RNF43Q68DV7 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RNF43Q68DV7 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
RNF43Q68DV7 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
RNF43Q68DV7 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RNF43Q68DV7 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RNF43Q68DV7 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC17.12■□□□□ 0.33
RNF43Q68DV7 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RNF43Q68DV7 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC17.12■□□□□ 0.33
RNF43Q68DV7 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RNF43Q68DV7 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RNF43Q68DV7 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
RNF43Q68DV7 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RNF43Q68DV7 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC17.12■□□□□ 0.33
RNF43Q68DV7 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RNF43Q68DV7 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RNF43Q68DV7 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RNF43Q68DV7 STARD13-205ENST00000439831 945 ntTSL 2 BASIC17.12■□□□□ 0.33
RNF43Q68DV7 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC17.12■□□□□ 0.33
RNF43Q68DV7 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC17.12■□□□□ 0.33
RNF43Q68DV7 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RNF43Q68DV7 SLBP-205ENST00000488267 987 ntTSL 2 BASIC17.12■□□□□ 0.33
RNF43Q68DV7 AC069335.1-201ENST00000489972 472 ntBASIC17.12■□□□□ 0.33
RNF43Q68DV7 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC17.12■□□□□ 0.33
RNF43Q68DV7 TERF1P3-201ENST00000505638 1227 ntBASIC17.12■□□□□ 0.33
RNF43Q68DV7 POLD4-211ENST00000539074 714 ntTSL 3 BASIC17.12■□□□□ 0.33
RNF43Q68DV7 DUX4L27-201ENST00000554796 1261 ntBASIC17.12■□□□□ 0.33
RNF43Q68DV7 AC005225.4-201ENST00000557330 545 ntBASIC17.12■□□□□ 0.33
RNF43Q68DV7 KRT8P23-201ENST00000560090 1207 ntBASIC17.12■□□□□ 0.33
RNF43Q68DV7 AL390955.2-201ENST00000603032 514 ntBASIC17.12■□□□□ 0.33
RNF43Q68DV7 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
RNF43Q68DV7 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RNF43Q68DV7 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC17.12■□□□□ 0.33
RNF43Q68DV7 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
RNF43Q68DV7 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RNF43Q68DV7 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RNF43Q68DV7 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC17.12■□□□□ 0.33
RNF43Q68DV7 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.12■□□□□ 0.33
RNF43Q68DV7 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC17.12■□□□□ 0.33
RNF43Q68DV7 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RNF43Q68DV7 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RNF43Q68DV7 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC17.12■□□□□ 0.33
RNF43Q68DV7 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RNF43Q68DV7 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RNF43Q68DV7 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
RNF43Q68DV7 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
RNF43Q68DV7 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC17.11■□□□□ 0.33
RNF43Q68DV7 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RNF43Q68DV7 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
RNF43Q68DV7 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC17.11■□□□□ 0.33
RNF43Q68DV7 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RNF43Q68DV7 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
RNF43Q68DV7 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC17.11■□□□□ 0.33
RNF43Q68DV7 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RNF43Q68DV7 MIR346-201ENST00000362234 95 ntBASIC17.11■□□□□ 0.33
RNF43Q68DV7 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
RNF43Q68DV7 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC17.11■□□□□ 0.33
RNF43Q68DV7 CDK2AP2P3-201ENST00000422476 372 ntBASIC17.11■□□□□ 0.33
RNF43Q68DV7 GPS2P2-201ENST00000430745 888 ntBASIC17.11■□□□□ 0.33
RNF43Q68DV7 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC17.11■□□□□ 0.33
RNF43Q68DV7 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC17.11■□□□□ 0.33
RNF43Q68DV7 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC17.11■□□□□ 0.33
RNF43Q68DV7 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC17.11■□□□□ 0.33
RNF43Q68DV7 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC17.11■□□□□ 0.33
RNF43Q68DV7 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC17.11■□□□□ 0.33
RNF43Q68DV7 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RNF43Q68DV7 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC17.11■□□□□ 0.33
RNF43Q68DV7 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
RNF43Q68DV7 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC17.11■□□□□ 0.33
RNF43Q68DV7 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC17.11■□□□□ 0.33
RNF43Q68DV7 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RNF43Q68DV7 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RNF43Q68DV7 BSG-215ENST00000618006 1329 ntTSL 2 BASIC17.11■□□□□ 0.33
RNF43Q68DV7 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC17.11■□□□□ 0.33
RNF43Q68DV7 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RNF43Q68DV7 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
RNF43Q68DV7 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RNF43Q68DV7 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RNF43Q68DV7 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC17.11■□□□□ 0.33
RNF43Q68DV7 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
RNF43Q68DV7 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC17.11■□□□□ 0.33
RNF43Q68DV7 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RNF43Q68DV7 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC17.11■□□□□ 0.33
RNF43Q68DV7 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RNF43Q68DV7 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
RNF43Q68DV7 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC17.11■□□□□ 0.33
RNF43Q68DV7 AC092384.3-202ENST00000564646 2873 ntBASIC17.11■□□□□ 0.33
RNF43Q68DV7 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC17.1■□□□□ 0.33
RNF43Q68DV7 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC17.1■□□□□ 0.33
RNF43Q68DV7 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RNF43Q68DV7 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms