Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 TSACC-208ENST00000481479 741 ntTSL 2 BASIC10.72□□□□□ -0.69
VPS13DQ5THJ4 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
VPS13DQ5THJ4 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
VPS13DQ5THJ4 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC10.72□□□□□ -0.69
VPS13DQ5THJ4 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC10.72□□□□□ -0.69
VPS13DQ5THJ4 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC10.72□□□□□ -0.69
VPS13DQ5THJ4 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
VPS13DQ5THJ4 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
VPS13DQ5THJ4 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
VPS13DQ5THJ4 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC10.72□□□□□ -0.69
VPS13DQ5THJ4 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC10.72□□□□□ -0.69
VPS13DQ5THJ4 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC10.72□□□□□ -0.69
VPS13DQ5THJ4 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC10.72□□□□□ -0.69
VPS13DQ5THJ4 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
VPS13DQ5THJ4 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
VPS13DQ5THJ4 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC10.72□□□□□ -0.69
VPS13DQ5THJ4 AL008638.5-201ENST00000623814 1298 ntBASIC10.72□□□□□ -0.69
VPS13DQ5THJ4 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.69
VPS13DQ5THJ4 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
VPS13DQ5THJ4 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
VPS13DQ5THJ4 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
VPS13DQ5THJ4 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
VPS13DQ5THJ4 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC10.72□□□□□ -0.69
VPS13DQ5THJ4 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.69
VPS13DQ5THJ4 KRT8P19-201ENST00000551916 1455 ntBASIC10.72□□□□□ -0.69
VPS13DQ5THJ4 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
VPS13DQ5THJ4 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
VPS13DQ5THJ4 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC10.72□□□□□ -0.69
VPS13DQ5THJ4 RPS3-201ENST00000278572 907 ntTSL 3 BASIC10.72□□□□□ -0.69
VPS13DQ5THJ4 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC10.72□□□□□ -0.69
VPS13DQ5THJ4 PKIG-203ENST00000372887 769 ntTSL 3 BASIC10.72□□□□□ -0.69
VPS13DQ5THJ4 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC10.72□□□□□ -0.69
VPS13DQ5THJ4 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC10.72□□□□□ -0.69
VPS13DQ5THJ4 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC10.72□□□□□ -0.69
VPS13DQ5THJ4 USP40-206ENST00000443711 628 ntTSL 2 BASIC10.72□□□□□ -0.69
VPS13DQ5THJ4 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
VPS13DQ5THJ4 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC10.72□□□□□ -0.69
VPS13DQ5THJ4 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC10.72□□□□□ -0.69
VPS13DQ5THJ4 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
VPS13DQ5THJ4 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC10.72□□□□□ -0.69
VPS13DQ5THJ4 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC10.72□□□□□ -0.69
VPS13DQ5THJ4 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC10.72□□□□□ -0.69
VPS13DQ5THJ4 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC10.72□□□□□ -0.69
VPS13DQ5THJ4 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
VPS13DQ5THJ4 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC10.72□□□□□ -0.69
VPS13DQ5THJ4 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC10.72□□□□□ -0.69
VPS13DQ5THJ4 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
VPS13DQ5THJ4 RPL13AP25-201ENST00000484130 612 ntBASIC10.72□□□□□ -0.69
VPS13DQ5THJ4 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
VPS13DQ5THJ4 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC10.72□□□□□ -0.69
VPS13DQ5THJ4 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC10.71□□□□□ -0.69
VPS13DQ5THJ4 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
VPS13DQ5THJ4 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC10.71□□□□□ -0.69
VPS13DQ5THJ4 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
VPS13DQ5THJ4 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC10.71□□□□□ -0.69
VPS13DQ5THJ4 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
VPS13DQ5THJ4 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC10.71□□□□□ -0.69
VPS13DQ5THJ4 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC10.71□□□□□ -0.69
VPS13DQ5THJ4 AL591846.1-201ENST00000451736 433 ntBASIC10.71□□□□□ -0.69
VPS13DQ5THJ4 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC10.71□□□□□ -0.69
VPS13DQ5THJ4 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC10.71□□□□□ -0.69
VPS13DQ5THJ4 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
VPS13DQ5THJ4 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC10.71□□□□□ -0.69
VPS13DQ5THJ4 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC10.71□□□□□ -0.69
VPS13DQ5THJ4 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC10.71□□□□□ -0.69
VPS13DQ5THJ4 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC10.71□□□□□ -0.69
VPS13DQ5THJ4 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
VPS13DQ5THJ4 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC10.71□□□□□ -0.69
VPS13DQ5THJ4 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC10.71□□□□□ -0.69
VPS13DQ5THJ4 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
VPS13DQ5THJ4 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
VPS13DQ5THJ4 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
VPS13DQ5THJ4 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC10.71□□□□□ -0.69
VPS13DQ5THJ4 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC10.71□□□□□ -0.69
VPS13DQ5THJ4 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
VPS13DQ5THJ4 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC10.71□□□□□ -0.69
VPS13DQ5THJ4 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC10.71□□□□□ -0.69
VPS13DQ5THJ4 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC10.71□□□□□ -0.69
VPS13DQ5THJ4 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC10.71□□□□□ -0.69
VPS13DQ5THJ4 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC10.71□□□□□ -0.69
VPS13DQ5THJ4 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC10.71□□□□□ -0.69
VPS13DQ5THJ4 AC016694.1-201ENST00000434179 700 ntBASIC10.71□□□□□ -0.69
VPS13DQ5THJ4 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC10.71□□□□□ -0.69
VPS13DQ5THJ4 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC10.71□□□□□ -0.69
VPS13DQ5THJ4 RN7SL219P-201ENST00000582872 296 ntBASIC10.71□□□□□ -0.69
VPS13DQ5THJ4 AC020914.3-201ENST00000594712 304 ntBASIC10.71□□□□□ -0.69
VPS13DQ5THJ4 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.7
VPS13DQ5THJ4 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC10.71□□□□□ -0.7
VPS13DQ5THJ4 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC10.71□□□□□ -0.7
VPS13DQ5THJ4 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.7
VPS13DQ5THJ4 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC10.71□□□□□ -0.7
VPS13DQ5THJ4 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC10.71□□□□□ -0.7
VPS13DQ5THJ4 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC10.71□□□□□ -0.7
VPS13DQ5THJ4 BRF1-202ENST00000379932 884 ntTSL 5 BASIC10.71□□□□□ -0.7
VPS13DQ5THJ4 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC10.71□□□□□ -0.7
VPS13DQ5THJ4 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC10.71□□□□□ -0.7
VPS13DQ5THJ4 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC10.71□□□□□ -0.7
VPS13DQ5THJ4 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC10.71□□□□□ -0.7
VPS13DQ5THJ4 RN7SL190P-201ENST00000582519 257 ntBASIC10.71□□□□□ -0.7
VPS13DQ5THJ4 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC10.71□□□□□ -0.7
Retrieved 100 of 98,524 protein–RNA pairs in 98.9 ms