Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC16.91■□□□□ 0.3
CHD9Q3L8U1 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC16.91■□□□□ 0.3
CHD9Q3L8U1 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC16.91■□□□□ 0.3
CHD9Q3L8U1 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
CHD9Q3L8U1 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CHD9Q3L8U1 AC005622.1-201ENST00000636801 1703 ntBASIC16.91■□□□□ 0.3
CHD9Q3L8U1 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC16.91■□□□□ 0.3
CHD9Q3L8U1 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC16.91■□□□□ 0.3
CHD9Q3L8U1 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CHD9Q3L8U1 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CHD9Q3L8U1 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC16.91■□□□□ 0.3
CHD9Q3L8U1 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC16.91■□□□□ 0.3
CHD9Q3L8U1 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CHD9Q3L8U1 UFM1-202ENST00000379649 846 ntTSL 4 BASIC16.91■□□□□ 0.3
CHD9Q3L8U1 AL627389.1-201ENST00000413508 1182 ntBASIC16.91■□□□□ 0.3
CHD9Q3L8U1 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC16.91■□□□□ 0.3
CHD9Q3L8U1 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC16.91■□□□□ 0.3
CHD9Q3L8U1 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC16.91■□□□□ 0.3
CHD9Q3L8U1 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC16.91■□□□□ 0.3
CHD9Q3L8U1 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
CHD9Q3L8U1 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC16.9■□□□□ 0.3
CHD9Q3L8U1 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC16.9■□□□□ 0.3
CHD9Q3L8U1 LETM1P2-201ENST00000597330 2178 ntBASIC16.9■□□□□ 0.3
CHD9Q3L8U1 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC16.9■□□□□ 0.3
CHD9Q3L8U1 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
CHD9Q3L8U1 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
CHD9Q3L8U1 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CHD9Q3L8U1 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
CHD9Q3L8U1 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
CHD9Q3L8U1 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CHD9Q3L8U1 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CHD9Q3L8U1 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC16.9■□□□□ 0.3
CHD9Q3L8U1 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC16.9■□□□□ 0.3
CHD9Q3L8U1 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC16.9■□□□□ 0.3
CHD9Q3L8U1 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CHD9Q3L8U1 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
CHD9Q3L8U1 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
CHD9Q3L8U1 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CHD9Q3L8U1 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
CHD9Q3L8U1 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CHD9Q3L8U1 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC16.9■□□□□ 0.3
CHD9Q3L8U1 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CHD9Q3L8U1 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC16.9■□□□□ 0.3
CHD9Q3L8U1 AGER-206ENST00000375070 1463 ntTSL 5 BASIC16.9■□□□□ 0.3
CHD9Q3L8U1 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CHD9Q3L8U1 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC16.9■□□□□ 0.3
CHD9Q3L8U1 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
CHD9Q3L8U1 PCGF3-213ENST00000620529 1899 ntBASIC16.9■□□□□ 0.3
CHD9Q3L8U1 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC16.9■□□□□ 0.3
CHD9Q3L8U1 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC16.9■□□□□ 0.3
CHD9Q3L8U1 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC16.9■□□□□ 0.3
CHD9Q3L8U1 PAM16-215ENST00000577031 548 ntTSL 4 BASIC16.9■□□□□ 0.3
CHD9Q3L8U1 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CHD9Q3L8U1 AL138709.1-201ENST00000614840 1693 ntBASIC16.9■□□□□ 0.3
CHD9Q3L8U1 AHCYP2-201ENST00000430630 1300 ntBASIC16.89■□□□□ 0.3
CHD9Q3L8U1 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
CHD9Q3L8U1 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CHD9Q3L8U1 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CHD9Q3L8U1 AC018470.1-201ENST00000624790 3129 ntBASIC16.89■□□□□ 0.29
CHD9Q3L8U1 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CHD9Q3L8U1 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CHD9Q3L8U1 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CHD9Q3L8U1 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC16.89■□□□□ 0.29
CHD9Q3L8U1 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CHD9Q3L8U1 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CHD9Q3L8U1 GPX4-206ENST00000588919 803 ntTSL 2 BASIC16.89■□□□□ 0.29
CHD9Q3L8U1 NDUFV2P1-201ENST00000596415 907 ntBASIC16.89■□□□□ 0.29
CHD9Q3L8U1 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC16.89■□□□□ 0.29
CHD9Q3L8U1 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
CHD9Q3L8U1 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC16.89■□□□□ 0.29
CHD9Q3L8U1 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC16.89■□□□□ 0.29
CHD9Q3L8U1 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
CHD9Q3L8U1 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC16.89■□□□□ 0.29
CHD9Q3L8U1 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CHD9Q3L8U1 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC16.89■□□□□ 0.29
CHD9Q3L8U1 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CHD9Q3L8U1 FTLP1-201ENST00000449155 526 ntBASIC16.89■□□□□ 0.29
CHD9Q3L8U1 DRD5P1-201ENST00000456605 1438 ntBASIC16.89■□□□□ 0.29
CHD9Q3L8U1 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC16.89■□□□□ 0.29
CHD9Q3L8U1 AC078819.1-201ENST00000547454 765 ntBASIC16.89■□□□□ 0.29
CHD9Q3L8U1 AC012085.1-201ENST00000548270 765 ntBASIC16.89■□□□□ 0.29
CHD9Q3L8U1 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC16.89■□□□□ 0.29
CHD9Q3L8U1 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CHD9Q3L8U1 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CHD9Q3L8U1 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC16.89■□□□□ 0.29
CHD9Q3L8U1 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CHD9Q3L8U1 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CHD9Q3L8U1 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC16.89■□□□□ 0.29
CHD9Q3L8U1 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CHD9Q3L8U1 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CHD9Q3L8U1 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CHD9Q3L8U1 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
CHD9Q3L8U1 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CHD9Q3L8U1 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
CHD9Q3L8U1 KRTAP10-13P-201ENST00000412914 571 ntBASIC16.88■□□□□ 0.29
CHD9Q3L8U1 FTLP10-202ENST00000505798 471 ntBASIC16.88■□□□□ 0.29
CHD9Q3L8U1 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC16.88■□□□□ 0.29
CHD9Q3L8U1 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC16.88■□□□□ 0.29
CHD9Q3L8U1 DNAJC17-212ENST00000627802 428 ntTSL 4 BASIC16.88■□□□□ 0.29
CHD9Q3L8U1 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC16.88■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms