Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HIST1H1AQ02539 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HIST1H1AQ02539 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC12.57□□□□□ -0.4
HIST1H1AQ02539 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HIST1H1AQ02539 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
HIST1H1AQ02539 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
HIST1H1AQ02539 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC12.56□□□□□ -0.4
HIST1H1AQ02539 AC097376.2-205ENST00000610159 5334 ntBASIC12.56□□□□□ -0.4
HIST1H1AQ02539 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
HIST1H1AQ02539 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HIST1H1AQ02539 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC12.56□□□□□ -0.4
HIST1H1AQ02539 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
HIST1H1AQ02539 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
HIST1H1AQ02539 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HIST1H1AQ02539 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
HIST1H1AQ02539 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
HIST1H1AQ02539 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HIST1H1AQ02539 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC12.56□□□□□ -0.4
HIST1H1AQ02539 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC12.56□□□□□ -0.4
HIST1H1AQ02539 LAGE3P1-201ENST00000425356 484 ntBASIC12.56□□□□□ -0.4
HIST1H1AQ02539 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC12.56□□□□□ -0.4
HIST1H1AQ02539 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC12.56□□□□□ -0.4
HIST1H1AQ02539 AC087163.2-201ENST00000457299 853 ntBASIC12.56□□□□□ -0.4
HIST1H1AQ02539 ARTN-206ENST00000472435 402 ntTSL 3 BASIC12.56□□□□□ -0.4
HIST1H1AQ02539 SKP2-204ENST00000508514 821 ntTSL 3 BASIC12.56□□□□□ -0.4
HIST1H1AQ02539 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
HIST1H1AQ02539 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC12.56□□□□□ -0.4
HIST1H1AQ02539 AC021087.4-201ENST00000563761 564 ntBASIC12.56□□□□□ -0.4
HIST1H1AQ02539 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
HIST1H1AQ02539 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
HIST1H1AQ02539 AC013467.2-201ENST00000605472 835 ntBASIC12.56□□□□□ -0.4
HIST1H1AQ02539 IFNL4P1-201ENST00000607083 540 ntBASIC12.56□□□□□ -0.4
HIST1H1AQ02539 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
HIST1H1AQ02539 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC12.56□□□□□ -0.4
HIST1H1AQ02539 VILL-207ENST00000465644 1857 ntTSL 5 BASIC12.56□□□□□ -0.4
HIST1H1AQ02539 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HIST1H1AQ02539 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HIST1H1AQ02539 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HIST1H1AQ02539 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
HIST1H1AQ02539 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
HIST1H1AQ02539 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
HIST1H1AQ02539 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HIST1H1AQ02539 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC12.56□□□□□ -0.4
HIST1H1AQ02539 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
HIST1H1AQ02539 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
HIST1H1AQ02539 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC12.56□□□□□ -0.4
HIST1H1AQ02539 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC12.56□□□□□ -0.4
HIST1H1AQ02539 CICP13-201ENST00000422015 2789 ntBASIC12.56□□□□□ -0.4
HIST1H1AQ02539 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HIST1H1AQ02539 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
HIST1H1AQ02539 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC12.56□□□□□ -0.4
HIST1H1AQ02539 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
HIST1H1AQ02539 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HIST1H1AQ02539 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HIST1H1AQ02539 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
HIST1H1AQ02539 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HIST1H1AQ02539 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC12.56□□□□□ -0.4
HIST1H1AQ02539 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HIST1H1AQ02539 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
HIST1H1AQ02539 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
HIST1H1AQ02539 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HIST1H1AQ02539 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC12.55□□□□□ -0.4
HIST1H1AQ02539 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC12.55□□□□□ -0.4
HIST1H1AQ02539 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
HIST1H1AQ02539 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
HIST1H1AQ02539 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
HIST1H1AQ02539 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC12.55□□□□□ -0.4
HIST1H1AQ02539 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HIST1H1AQ02539 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC12.55□□□□□ -0.4
HIST1H1AQ02539 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC12.55□□□□□ -0.4
HIST1H1AQ02539 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HIST1H1AQ02539 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
HIST1H1AQ02539 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
HIST1H1AQ02539 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC12.55□□□□□ -0.4
HIST1H1AQ02539 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
HIST1H1AQ02539 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HIST1H1AQ02539 AKR1C7P-201ENST00000305623 895 ntBASIC12.55□□□□□ -0.4
HIST1H1AQ02539 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HIST1H1AQ02539 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC12.55□□□□□ -0.4
HIST1H1AQ02539 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC12.55□□□□□ -0.4
HIST1H1AQ02539 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC12.55□□□□□ -0.4
HIST1H1AQ02539 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC12.55□□□□□ -0.4
HIST1H1AQ02539 AC073648.2-201ENST00000510116 352 ntBASIC12.55□□□□□ -0.4
HIST1H1AQ02539 SDHD-206ENST00000528182 754 ntTSL 3 BASIC12.55□□□□□ -0.4
HIST1H1AQ02539 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC12.55□□□□□ -0.4
HIST1H1AQ02539 PNMT-203ENST00000581428 677 ntTSL 2 BASIC12.55□□□□□ -0.4
HIST1H1AQ02539 CLEC4GP1-201ENST00000596555 870 ntBASIC12.55□□□□□ -0.4
HIST1H1AQ02539 AC025062.2-201ENST00000605477 670 ntBASIC12.55□□□□□ -0.4
HIST1H1AQ02539 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC12.55□□□□□ -0.4
HIST1H1AQ02539 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC12.55□□□□□ -0.4
HIST1H1AQ02539 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HIST1H1AQ02539 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC12.55□□□□□ -0.4
HIST1H1AQ02539 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC12.55□□□□□ -0.4
HIST1H1AQ02539 AF228730.7-201ENST00000641842 219 ntBASIC12.55□□□□□ -0.4
HIST1H1AQ02539 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC12.55□□□□□ -0.4
HIST1H1AQ02539 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
HIST1H1AQ02539 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HIST1H1AQ02539 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
HIST1H1AQ02539 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HIST1H1AQ02539 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 50.8 ms