Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CL1P78423 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CL1P78423 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC13.2□□□□□ -0.3
CX3CL1P78423 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CL1P78423 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
CX3CL1P78423 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CL1P78423 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CL1P78423 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC13.2□□□□□ -0.3
CX3CL1P78423 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CL1P78423 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CL1P78423 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CL1P78423 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC13.19□□□□□ -0.3
CX3CL1P78423 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC13.19□□□□□ -0.3
CX3CL1P78423 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CX3CL1P78423 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CX3CL1P78423 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CX3CL1P78423 ALOX12P2-203ENST00000570921 1945 ntBASIC13.19□□□□□ -0.3
CX3CL1P78423 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CX3CL1P78423 GGT4P-201ENST00000623672 1708 ntBASIC13.19□□□□□ -0.3
CX3CL1P78423 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
CX3CL1P78423 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CX3CL1P78423 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CX3CL1P78423 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CX3CL1P78423 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CX3CL1P78423 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
CX3CL1P78423 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
CX3CL1P78423 REM2-202ENST00000536884 1331 ntTSL 2 BASIC13.19□□□□□ -0.3
CX3CL1P78423 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CX3CL1P78423 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
CX3CL1P78423 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC13.19□□□□□ -0.3
CX3CL1P78423 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CX3CL1P78423 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC13.19□□□□□ -0.3
CX3CL1P78423 GGT3P-204ENST00000453783 1664 ntBASIC13.19□□□□□ -0.3
CX3CL1P78423 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CX3CL1P78423 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC13.19□□□□□ -0.3
CX3CL1P78423 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CX3CL1P78423 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
CX3CL1P78423 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC13.19□□□□□ -0.3
CX3CL1P78423 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
CX3CL1P78423 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CX3CL1P78423 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
CX3CL1P78423 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CX3CL1P78423 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CX3CL1P78423 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CX3CL1P78423 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CX3CL1P78423 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CX3CL1P78423 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC13.19□□□□□ -0.3
CX3CL1P78423 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC13.19□□□□□ -0.3
CX3CL1P78423 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC13.19□□□□□ -0.3
CX3CL1P78423 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CX3CL1P78423 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC13.19□□□□□ -0.3
CX3CL1P78423 AC074386.1-202ENST00000463561 864 ntBASIC13.19□□□□□ -0.3
CX3CL1P78423 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CX3CL1P78423 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
CX3CL1P78423 MIR3909-201ENST00000579518 119 ntBASIC13.19□□□□□ -0.3
CX3CL1P78423 RPS15-207ENST00000591032 550 ntTSL 3 BASIC13.19□□□□□ -0.3
CX3CL1P78423 RPS15-212ENST00000593052 629 ntTSL 2 BASIC13.19□□□□□ -0.3
CX3CL1P78423 AL513190.1-201ENST00000621254 727 ntBASIC13.19□□□□□ -0.3
CX3CL1P78423 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CX3CL1P78423 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CX3CL1P78423 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
CX3CL1P78423 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CX3CL1P78423 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
CX3CL1P78423 GPAA1P2-202ENST00000606848 1787 ntBASIC13.19□□□□□ -0.3
CX3CL1P78423 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC13.19□□□□□ -0.3
CX3CL1P78423 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC13.19□□□□□ -0.3
CX3CL1P78423 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
CX3CL1P78423 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
CX3CL1P78423 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CX3CL1P78423 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CX3CL1P78423 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC13.18□□□□□ -0.3
CX3CL1P78423 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
CX3CL1P78423 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CX3CL1P78423 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
CX3CL1P78423 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CX3CL1P78423 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CX3CL1P78423 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
CX3CL1P78423 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC13.18□□□□□ -0.3
CX3CL1P78423 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
CX3CL1P78423 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
CX3CL1P78423 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CX3CL1P78423 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CX3CL1P78423 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CX3CL1P78423 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
CX3CL1P78423 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CX3CL1P78423 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CX3CL1P78423 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CX3CL1P78423 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CX3CL1P78423 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
CX3CL1P78423 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
CX3CL1P78423 CD99-202ENST00000381180 530 ntTSL 2 BASIC13.18□□□□□ -0.3
CX3CL1P78423 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
CX3CL1P78423 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
CX3CL1P78423 POLD2P1-201ENST00000511220 997 ntBASIC13.18□□□□□ -0.3
CX3CL1P78423 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC13.18□□□□□ -0.3
CX3CL1P78423 THTPA-204ENST00000554970 569 ntTSL 4 BASIC13.18□□□□□ -0.3
CX3CL1P78423 THTPA-206ENST00000556015 535 ntTSL 3 BASIC13.18□□□□□ -0.3
CX3CL1P78423 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC13.18□□□□□ -0.3
CX3CL1P78423 PDPK2P-202ENST00000562415 1191 ntBASIC13.18□□□□□ -0.3
CX3CL1P78423 AC092865.6-201ENST00000642101 219 ntBASIC13.18□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 260.4 ms