Protein–RNA interactions for Protein: P56277

CMC4, Cx9C motif-containing protein 4, humanhuman

Predicted RBP Predictions only

Length 68 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CMC4P56277 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
CMC4P56277 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CMC4P56277 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CMC4P56277 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC12.13□□□□□ -0.47
CMC4P56277 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
CMC4P56277 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC12.13□□□□□ -0.47
CMC4P56277 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
CMC4P56277 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CMC4P56277 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
CMC4P56277 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC12.13□□□□□ -0.47
CMC4P56277 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CMC4P56277 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC12.13□□□□□ -0.47
CMC4P56277 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC12.13□□□□□ -0.47
CMC4P56277 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC12.13□□□□□ -0.47
CMC4P56277 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC12.13□□□□□ -0.47
CMC4P56277 PON3-203ENST00000427422 894 ntTSL 3 BASIC12.13□□□□□ -0.47
CMC4P56277 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC12.13□□□□□ -0.47
CMC4P56277 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC12.13□□□□□ -0.47
CMC4P56277 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
CMC4P56277 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC12.13□□□□□ -0.47
CMC4P56277 AL139010.1-201ENST00000454878 894 ntBASIC12.13□□□□□ -0.47
CMC4P56277 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
CMC4P56277 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC12.13□□□□□ -0.47
CMC4P56277 GATD1-206ENST00000526325 756 ntTSL 5 BASIC12.13□□□□□ -0.47
CMC4P56277 AC069262.1-201ENST00000539058 672 ntBASIC12.13□□□□□ -0.47
CMC4P56277 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC12.13□□□□□ -0.47
CMC4P56277 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC12.13□□□□□ -0.47
CMC4P56277 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CMC4P56277 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC12.13□□□□□ -0.47
CMC4P56277 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC12.13□□□□□ -0.47
CMC4P56277 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CMC4P56277 GOLGA6L17P-202ENST00000614358 1398 ntBASIC12.13□□□□□ -0.47
CMC4P56277 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
CMC4P56277 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC12.13□□□□□ -0.47
CMC4P56277 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CMC4P56277 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CMC4P56277 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
CMC4P56277 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC12.13□□□□□ -0.47
CMC4P56277 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
CMC4P56277 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CMC4P56277 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
CMC4P56277 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
CMC4P56277 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CMC4P56277 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CMC4P56277 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC12.13□□□□□ -0.47
CMC4P56277 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC12.13□□□□□ -0.47
CMC4P56277 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
CMC4P56277 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
CMC4P56277 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CMC4P56277 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC12.12□□□□□ -0.47
CMC4P56277 KRT18P28-201ENST00000453838 1332 ntBASIC12.12□□□□□ -0.47
CMC4P56277 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CMC4P56277 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
CMC4P56277 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC12.12□□□□□ -0.47
CMC4P56277 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
CMC4P56277 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
CMC4P56277 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
CMC4P56277 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
CMC4P56277 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC12.12□□□□□ -0.47
CMC4P56277 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CMC4P56277 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
CMC4P56277 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
CMC4P56277 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
CMC4P56277 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC12.12□□□□□ -0.47
CMC4P56277 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC12.12□□□□□ -0.47
CMC4P56277 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC12.12□□□□□ -0.47
CMC4P56277 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC12.12□□□□□ -0.47
CMC4P56277 NKILA-202ENST00000614771 2598 ntBASIC12.12□□□□□ -0.47
CMC4P56277 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CMC4P56277 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CMC4P56277 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CMC4P56277 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
CMC4P56277 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC12.12□□□□□ -0.47
CMC4P56277 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC12.12□□□□□ -0.47
CMC4P56277 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
CMC4P56277 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CMC4P56277 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CMC4P56277 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC12.12□□□□□ -0.47
CMC4P56277 AGGF1P2-201ENST00000426656 2106 ntBASIC12.12□□□□□ -0.47
CMC4P56277 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC12.12□□□□□ -0.47
CMC4P56277 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
CMC4P56277 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
CMC4P56277 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC12.12□□□□□ -0.47
CMC4P56277 AC026150.2-201ENST00000564693 1156 ntBASIC12.12□□□□□ -0.47
CMC4P56277 LSM12-202ENST00000585388 942 ntTSL 3 BASIC12.12□□□□□ -0.47
CMC4P56277 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC12.12□□□□□ -0.47
CMC4P56277 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC12.12□□□□□ -0.47
CMC4P56277 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
CMC4P56277 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC12.12□□□□□ -0.47
CMC4P56277 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
CMC4P56277 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CMC4P56277 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
CMC4P56277 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
CMC4P56277 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
CMC4P56277 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CMC4P56277 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC12.12□□□□□ -0.47
CMC4P56277 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
CMC4P56277 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CMC4P56277 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
CMC4P56277 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms