Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
LIM2P55344 MIR346-201ENST00000362234 95 ntBASIC15.48■□□□□ 0.07
LIM2P55344 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
LIM2P55344 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
LIM2P55344 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
LIM2P55344 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC15.48■□□□□ 0.07
LIM2P55344 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC15.48■□□□□ 0.07
LIM2P55344 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC15.48■□□□□ 0.07
LIM2P55344 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC15.48■□□□□ 0.07
LIM2P55344 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC15.48■□□□□ 0.07
LIM2P55344 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC15.48■□□□□ 0.07
LIM2P55344 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC15.48■□□□□ 0.07
LIM2P55344 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
LIM2P55344 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC15.48■□□□□ 0.07
LIM2P55344 AP000842.3-202ENST00000569238 1080 ntBASIC15.48■□□□□ 0.07
LIM2P55344 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC15.48■□□□□ 0.07
LIM2P55344 SSH2-211ENST00000590153 570 ntTSL 4 BASIC15.48■□□□□ 0.07
LIM2P55344 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC15.48■□□□□ 0.07
LIM2P55344 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC15.48■□□□□ 0.07
LIM2P55344 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC15.48■□□□□ 0.07
LIM2P55344 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC15.48■□□□□ 0.07
LIM2P55344 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC15.48■□□□□ 0.07
LIM2P55344 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
LIM2P55344 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
LIM2P55344 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC15.48■□□□□ 0.07
LIM2P55344 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
LIM2P55344 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC15.48■□□□□ 0.07
LIM2P55344 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
LIM2P55344 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC15.48■□□□□ 0.07
LIM2P55344 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
LIM2P55344 FOXO1B-201ENST00000504678 1527 ntBASIC15.48■□□□□ 0.07
LIM2P55344 UXT-AS1-201ENST00000590504 1525 ntBASIC15.48■□□□□ 0.07
LIM2P55344 AL589702.1-201ENST00000641229 1509 ntBASIC15.48■□□□□ 0.07
LIM2P55344 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
LIM2P55344 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
LIM2P55344 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
LIM2P55344 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
LIM2P55344 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
LIM2P55344 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
LIM2P55344 AC006449.6-201ENST00000612330 2296 ntBASIC15.47■□□□□ 0.07
LIM2P55344 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC15.47■□□□□ 0.07
LIM2P55344 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
LIM2P55344 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
LIM2P55344 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
LIM2P55344 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
LIM2P55344 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
LIM2P55344 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC15.47■□□□□ 0.07
LIM2P55344 AC105917.1-201ENST00000506637 2539 ntBASIC15.47■□□□□ 0.07
LIM2P55344 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC15.47■□□□□ 0.07
LIM2P55344 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
LIM2P55344 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC15.47■□□□□ 0.07
LIM2P55344 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
LIM2P55344 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
LIM2P55344 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC15.47■□□□□ 0.07
LIM2P55344 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC15.47■□□□□ 0.07
LIM2P55344 PTMS-202ENST00000389462 773 ntTSL 2 BASIC15.47■□□□□ 0.07
LIM2P55344 AC254562.1-201ENST00000417586 456 ntBASIC15.47■□□□□ 0.07
LIM2P55344 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC15.47■□□□□ 0.07
LIM2P55344 AC142381.1-201ENST00000426099 345 ntBASIC15.47■□□□□ 0.07
LIM2P55344 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC15.47■□□□□ 0.07
LIM2P55344 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
LIM2P55344 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC15.47■□□□□ 0.07
LIM2P55344 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
LIM2P55344 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC15.47■□□□□ 0.07
LIM2P55344 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC15.47■□□□□ 0.07
LIM2P55344 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC15.47■□□□□ 0.07
LIM2P55344 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
LIM2P55344 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC15.47■□□□□ 0.07
LIM2P55344 AC004835.2-201ENST00000603762 682 ntBASIC15.47■□□□□ 0.07
LIM2P55344 SPTSSB-204ENST00000617024 1292 ntBASIC15.47■□□□□ 0.07
LIM2P55344 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC15.47■□□□□ 0.07
LIM2P55344 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC15.47■□□□□ 0.07
LIM2P55344 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
LIM2P55344 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
LIM2P55344 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
LIM2P55344 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC15.47■□□□□ 0.07
LIM2P55344 AL596087.1-201ENST00000400979 1969 ntBASIC15.47■□□□□ 0.07
LIM2P55344 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
LIM2P55344 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
LIM2P55344 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC15.47■□□□□ 0.07
LIM2P55344 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC15.47■□□□□ 0.07
LIM2P55344 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
LIM2P55344 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC15.46■□□□□ 0.07
LIM2P55344 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC15.46■□□□□ 0.07
LIM2P55344 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
LIM2P55344 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC15.46■□□□□ 0.07
LIM2P55344 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
LIM2P55344 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
LIM2P55344 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC15.46■□□□□ 0.07
LIM2P55344 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC15.46■□□□□ 0.07
LIM2P55344 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC15.46■□□□□ 0.07
LIM2P55344 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC15.46■□□□□ 0.07
LIM2P55344 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC15.46■□□□□ 0.07
LIM2P55344 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
LIM2P55344 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC15.46■□□□□ 0.07
LIM2P55344 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC15.46■□□□□ 0.07
LIM2P55344 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
LIM2P55344 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC15.46■□□□□ 0.07
LIM2P55344 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC15.46■□□□□ 0.07
LIM2P55344 AC005237.2-201ENST00000434368 219 ntBASIC15.46■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms