Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 PMS2P4-201ENST00000412466 1052 ntBASIC15.39■□□□□ 0.05
SOX3P41225 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SOX3P41225 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SOX3P41225 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC15.39■□□□□ 0.05
SOX3P41225 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SOX3P41225 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC15.39■□□□□ 0.05
SOX3P41225 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC15.39■□□□□ 0.05
SOX3P41225 FAM86C2P-203ENST00000528684 1004 ntBASIC15.39■□□□□ 0.05
SOX3P41225 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC15.39■□□□□ 0.05
SOX3P41225 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC15.39■□□□□ 0.05
SOX3P41225 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC15.39■□□□□ 0.05
SOX3P41225 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC15.39■□□□□ 0.05
SOX3P41225 MIR3909-201ENST00000579518 119 ntBASIC15.39■□□□□ 0.05
SOX3P41225 AC022145.2-201ENST00000598203 171 ntBASIC15.39■□□□□ 0.05
SOX3P41225 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC15.39■□□□□ 0.05
SOX3P41225 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SOX3P41225 AC026120.1-201ENST00000611536 926 ntBASIC15.39■□□□□ 0.05
SOX3P41225 AL513210.1-201ENST00000629608 234 ntBASIC15.39■□□□□ 0.05
SOX3P41225 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC15.39■□□□□ 0.05
SOX3P41225 AC105339.1-204ENST00000636249 355 ntBASIC15.39■□□□□ 0.05
SOX3P41225 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC15.39■□□□□ 0.05
SOX3P41225 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SOX3P41225 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SOX3P41225 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC15.39■□□□□ 0.05
SOX3P41225 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC15.39■□□□□ 0.05
SOX3P41225 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SOX3P41225 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
SOX3P41225 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
SOX3P41225 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
SOX3P41225 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC15.39■□□□□ 0.05
SOX3P41225 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
SOX3P41225 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SOX3P41225 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
SOX3P41225 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SOX3P41225 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
SOX3P41225 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SOX3P41225 LINC00895-201ENST00000629028 1637 ntBASIC15.39■□□□□ 0.05
SOX3P41225 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SOX3P41225 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SOX3P41225 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
SOX3P41225 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
SOX3P41225 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SOX3P41225 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SOX3P41225 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SOX3P41225 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC15.38■□□□□ 0.05
SOX3P41225 DBET-201ENST00000630918 3363 ntBASIC15.38■□□□□ 0.05
SOX3P41225 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
SOX3P41225 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SOX3P41225 MST1L-201ENST00000442552 2185 ntBASIC15.38■□□□□ 0.05
SOX3P41225 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SOX3P41225 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
SOX3P41225 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
SOX3P41225 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SOX3P41225 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC15.38■□□□□ 0.05
SOX3P41225 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
SOX3P41225 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
SOX3P41225 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
SOX3P41225 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC15.38■□□□□ 0.05
SOX3P41225 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
SOX3P41225 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
SOX3P41225 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC15.38■□□□□ 0.05
SOX3P41225 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SOX3P41225 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SOX3P41225 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
SOX3P41225 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SOX3P41225 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
SOX3P41225 AC004461.1-201ENST00000412461 403 ntBASIC15.38■□□□□ 0.05
SOX3P41225 TFAMP1-201ENST00000412727 736 ntBASIC15.38■□□□□ 0.05
SOX3P41225 AC092474.2-201ENST00000424288 719 ntBASIC15.38■□□□□ 0.05
SOX3P41225 SPDYE11-202ENST00000450699 704 ntBASIC15.38■□□□□ 0.05
SOX3P41225 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC15.38■□□□□ 0.05
SOX3P41225 GATB-205ENST00000508611 605 ntTSL 2 BASIC15.38■□□□□ 0.05
SOX3P41225 KRT8P48-201ENST00000515599 1220 ntBASIC15.38■□□□□ 0.05
SOX3P41225 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC15.38■□□□□ 0.05
SOX3P41225 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC15.38■□□□□ 0.05
SOX3P41225 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
SOX3P41225 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
SOX3P41225 AL135744.1-201ENST00000565098 629 ntBASIC15.38■□□□□ 0.05
SOX3P41225 SPDYE9P-201ENST00000570642 692 ntBASIC15.38■□□□□ 0.05
SOX3P41225 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC15.38■□□□□ 0.05
SOX3P41225 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC15.38■□□□□ 0.05
SOX3P41225 AC013467.2-201ENST00000605472 835 ntBASIC15.38■□□□□ 0.05
SOX3P41225 SPDYE10P-202ENST00000612005 668 ntBASIC15.38■□□□□ 0.05
SOX3P41225 SPDYE8P-202ENST00000612377 668 ntBASIC15.38■□□□□ 0.05
SOX3P41225 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC15.38■□□□□ 0.05
SOX3P41225 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
SOX3P41225 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
SOX3P41225 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC15.38■□□□□ 0.05
SOX3P41225 AL671710.1-201ENST00000610245 2349 ntBASIC15.38■□□□□ 0.05
SOX3P41225 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
SOX3P41225 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
SOX3P41225 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
SOX3P41225 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
SOX3P41225 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
SOX3P41225 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC15.38■□□□□ 0.05
SOX3P41225 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
SOX3P41225 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC15.37■□□□□ 0.05
SOX3P41225 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
SOX3P41225 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC15.37■□□□□ 0.05
SOX3P41225 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms