Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
MSX2P35548 CHCHD2P8-201ENST00000429873 447 ntBASIC15.62■□□□□ 0.09
MSX2P35548 PMS2P1-201ENST00000431037 1228 ntBASIC15.62■□□□□ 0.09
MSX2P35548 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC15.62■□□□□ 0.09
MSX2P35548 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC15.62■□□□□ 0.09
MSX2P35548 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC15.62■□□□□ 0.09
MSX2P35548 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
MSX2P35548 AC097493.4-201ENST00000641197 219 ntBASIC15.62■□□□□ 0.09
MSX2P35548 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC15.62■□□□□ 0.09
MSX2P35548 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC15.62■□□□□ 0.09
MSX2P35548 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
MSX2P35548 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
MSX2P35548 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
MSX2P35548 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
MSX2P35548 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
MSX2P35548 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC15.62■□□□□ 0.09
MSX2P35548 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
MSX2P35548 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
MSX2P35548 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC15.62■□□□□ 0.09
MSX2P35548 NSUN5P1-202ENST00000421140 1535 ntBASIC15.62■□□□□ 0.09
MSX2P35548 NSUN5P2-203ENST00000457352 1529 ntBASIC15.62■□□□□ 0.09
MSX2P35548 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
MSX2P35548 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
MSX2P35548 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
MSX2P35548 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
MSX2P35548 AC016734.2-201ENST00000624325 1377 ntBASIC15.62■□□□□ 0.09
MSX2P35548 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
MSX2P35548 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC15.61■□□□□ 0.09
MSX2P35548 AC092919.2-201ENST00000623631 1645 ntBASIC15.61■□□□□ 0.09
MSX2P35548 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
MSX2P35548 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC15.61■□□□□ 0.09
MSX2P35548 SLC22A20-204ENST00000530038 1673 ntBASIC15.61■□□□□ 0.09
MSX2P35548 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC15.61■□□□□ 0.09
MSX2P35548 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
MSX2P35548 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
MSX2P35548 MIR648-201ENST00000385046 94 ntBASIC15.61■□□□□ 0.09
MSX2P35548 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
MSX2P35548 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC15.61■□□□□ 0.09
MSX2P35548 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
MSX2P35548 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC15.61■□□□□ 0.09
MSX2P35548 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC15.61■□□□□ 0.09
MSX2P35548 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC15.61■□□□□ 0.09
MSX2P35548 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC15.61■□□□□ 0.09
MSX2P35548 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
MSX2P35548 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
MSX2P35548 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
MSX2P35548 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
MSX2P35548 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
MSX2P35548 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
MSX2P35548 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC15.61■□□□□ 0.09
MSX2P35548 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC15.61■□□□□ 0.09
MSX2P35548 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
MSX2P35548 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC15.61■□□□□ 0.09
MSX2P35548 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
MSX2P35548 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
MSX2P35548 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
MSX2P35548 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
MSX2P35548 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
MSX2P35548 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
MSX2P35548 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
MSX2P35548 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC15.6■□□□□ 0.09
MSX2P35548 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
MSX2P35548 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
MSX2P35548 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC15.6■□□□□ 0.09
MSX2P35548 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
MSX2P35548 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
MSX2P35548 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC15.6■□□□□ 0.09
MSX2P35548 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC15.6■□□□□ 0.09
MSX2P35548 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
MSX2P35548 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC15.6■□□□□ 0.09
MSX2P35548 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
MSX2P35548 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC15.6■□□□□ 0.09
MSX2P35548 BX276092.5-203ENST00000456199 560 ntBASIC15.6■□□□□ 0.09
MSX2P35548 CDV3-207ENST00000508481 661 ntTSL 3 BASIC15.6■□□□□ 0.09
MSX2P35548 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
MSX2P35548 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC15.6■□□□□ 0.09
MSX2P35548 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC15.6■□□□□ 0.09
MSX2P35548 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC15.6■□□□□ 0.09
MSX2P35548 CYP2A7P1-201ENST00000595391 815 ntBASIC15.6■□□□□ 0.09
MSX2P35548 AC073592.4-201ENST00000623827 446 ntBASIC15.6■□□□□ 0.09
MSX2P35548 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC15.6■□□□□ 0.09
MSX2P35548 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC15.6■□□□□ 0.09
MSX2P35548 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
MSX2P35548 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
MSX2P35548 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
MSX2P35548 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
MSX2P35548 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
MSX2P35548 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
MSX2P35548 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
MSX2P35548 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
MSX2P35548 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC15.6■□□□□ 0.09
MSX2P35548 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
MSX2P35548 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
MSX2P35548 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC15.6■□□□□ 0.09
MSX2P35548 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
MSX2P35548 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
MSX2P35548 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
MSX2P35548 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
MSX2P35548 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
MSX2P35548 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 67.8 ms