Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
MSH3P20585 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC16.26■□□□□ 0.19
MSH3P20585 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
MSH3P20585 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
MSH3P20585 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC16.26■□□□□ 0.19
MSH3P20585 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
MSH3P20585 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
MSH3P20585 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
MSH3P20585 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC16.26■□□□□ 0.19
MSH3P20585 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
MSH3P20585 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
MSH3P20585 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC16.26■□□□□ 0.19
MSH3P20585 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
MSH3P20585 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
MSH3P20585 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
MSH3P20585 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC16.26■□□□□ 0.19
MSH3P20585 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
MSH3P20585 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
MSH3P20585 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
MSH3P20585 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC16.25■□□□□ 0.19
MSH3P20585 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
MSH3P20585 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC16.25■□□□□ 0.19
MSH3P20585 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
MSH3P20585 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
MSH3P20585 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
MSH3P20585 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
MSH3P20585 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
MSH3P20585 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
MSH3P20585 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
MSH3P20585 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC16.25■□□□□ 0.19
MSH3P20585 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC16.25■□□□□ 0.19
MSH3P20585 AL162727.3-201ENST00000635661 2787 ntBASIC16.25■□□□□ 0.19
MSH3P20585 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC16.25■□□□□ 0.19
MSH3P20585 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
MSH3P20585 AC004461.1-201ENST00000412461 403 ntBASIC16.25■□□□□ 0.19
MSH3P20585 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
MSH3P20585 CNN2P11-201ENST00000429351 262 ntBASIC16.25■□□□□ 0.19
MSH3P20585 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
MSH3P20585 AC093724.1-201ENST00000448659 1027 ntBASIC16.25■□□□□ 0.19
MSH3P20585 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC16.25■□□□□ 0.19
MSH3P20585 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC16.25■□□□□ 0.19
MSH3P20585 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC16.25■□□□□ 0.19
MSH3P20585 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
MSH3P20585 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
MSH3P20585 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC16.25■□□□□ 0.19
MSH3P20585 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
MSH3P20585 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
MSH3P20585 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
MSH3P20585 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
MSH3P20585 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
MSH3P20585 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC16.25■□□□□ 0.19
MSH3P20585 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
MSH3P20585 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC16.25■□□□□ 0.19
MSH3P20585 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC16.25■□□□□ 0.19
MSH3P20585 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
MSH3P20585 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
MSH3P20585 CICP6-201ENST00000457191 2729 ntBASIC16.25■□□□□ 0.19
MSH3P20585 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC16.24■□□□□ 0.19
MSH3P20585 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
MSH3P20585 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
MSH3P20585 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC16.24■□□□□ 0.19
MSH3P20585 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
MSH3P20585 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
MSH3P20585 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
MSH3P20585 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
MSH3P20585 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC16.24■□□□□ 0.19
MSH3P20585 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
MSH3P20585 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
MSH3P20585 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
MSH3P20585 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC16.24■□□□□ 0.19
MSH3P20585 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC16.24■□□□□ 0.19
MSH3P20585 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
MSH3P20585 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
MSH3P20585 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
MSH3P20585 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
MSH3P20585 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC16.24■□□□□ 0.19
MSH3P20585 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC16.24■□□□□ 0.19
MSH3P20585 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC16.24■□□□□ 0.19
MSH3P20585 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC16.24■□□□□ 0.19
MSH3P20585 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC16.24■□□□□ 0.19
MSH3P20585 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
MSH3P20585 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
MSH3P20585 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC16.24■□□□□ 0.19
MSH3P20585 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC16.24■□□□□ 0.19
MSH3P20585 NKG7-205ENST00000600427 520 ntTSL 3 BASIC16.24■□□□□ 0.19
MSH3P20585 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC16.24■□□□□ 0.19
MSH3P20585 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC16.24■□□□□ 0.19
MSH3P20585 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC16.24■□□□□ 0.19
MSH3P20585 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
MSH3P20585 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
MSH3P20585 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
MSH3P20585 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
MSH3P20585 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
MSH3P20585 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
MSH3P20585 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
MSH3P20585 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
MSH3P20585 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
MSH3P20585 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC16.24■□□□□ 0.19
MSH3P20585 U82695.1-201ENST00000635752 1889 ntBASIC16.24■□□□□ 0.19
MSH3P20585 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms