Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
XRCC1P18887 STARD13-205ENST00000439831 945 ntTSL 2 BASIC16.3■□□□□ 0.2
XRCC1P18887 SPDYE11-202ENST00000450699 704 ntBASIC16.3■□□□□ 0.2
XRCC1P18887 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC16.3■□□□□ 0.2
XRCC1P18887 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC16.3■□□□□ 0.2
XRCC1P18887 RN7SL589P-201ENST00000481268 310 ntBASIC16.3■□□□□ 0.2
XRCC1P18887 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
XRCC1P18887 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC16.3■□□□□ 0.2
XRCC1P18887 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
XRCC1P18887 SPDYE9P-201ENST00000570642 692 ntBASIC16.3■□□□□ 0.2
XRCC1P18887 AC013467.2-201ENST00000605472 835 ntBASIC16.3■□□□□ 0.2
XRCC1P18887 SPDYE10P-202ENST00000612005 668 ntBASIC16.3■□□□□ 0.2
XRCC1P18887 SPDYE8P-202ENST00000612377 668 ntBASIC16.3■□□□□ 0.2
XRCC1P18887 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC16.3■□□□□ 0.2
XRCC1P18887 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC16.3■□□□□ 0.2
XRCC1P18887 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
XRCC1P18887 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
XRCC1P18887 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC16.3■□□□□ 0.2
XRCC1P18887 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC16.3■□□□□ 0.2
XRCC1P18887 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC16.3■□□□□ 0.2
XRCC1P18887 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
XRCC1P18887 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
XRCC1P18887 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC16.3■□□□□ 0.2
XRCC1P18887 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
XRCC1P18887 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
XRCC1P18887 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
XRCC1P18887 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
XRCC1P18887 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
XRCC1P18887 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
XRCC1P18887 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
XRCC1P18887 VILL-207ENST00000465644 1857 ntTSL 5 BASIC16.29■□□□□ 0.2
XRCC1P18887 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
XRCC1P18887 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
XRCC1P18887 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC16.29■□□□□ 0.2
XRCC1P18887 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
XRCC1P18887 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
XRCC1P18887 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
XRCC1P18887 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC16.29■□□□□ 0.2
XRCC1P18887 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
XRCC1P18887 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC16.29■□□□□ 0.2
XRCC1P18887 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
XRCC1P18887 FER1L4-210ENST00000615531 5998 ntBASIC16.29■□□□□ 0.2
XRCC1P18887 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
XRCC1P18887 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
XRCC1P18887 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
XRCC1P18887 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
XRCC1P18887 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
XRCC1P18887 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC16.29■□□□□ 0.2
XRCC1P18887 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
XRCC1P18887 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
XRCC1P18887 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
XRCC1P18887 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC16.29■□□□□ 0.2
XRCC1P18887 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
XRCC1P18887 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
XRCC1P18887 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
XRCC1P18887 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
XRCC1P18887 SLC9A3P2-201ENST00000447821 2021 ntBASIC16.29■□□□□ 0.2
XRCC1P18887 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC16.29■□□□□ 0.2
XRCC1P18887 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC16.29■□□□□ 0.2
XRCC1P18887 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC16.29■□□□□ 0.2
XRCC1P18887 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
XRCC1P18887 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
XRCC1P18887 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
XRCC1P18887 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC16.29■□□□□ 0.2
XRCC1P18887 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
XRCC1P18887 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC16.29■□□□□ 0.2
XRCC1P18887 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC16.29■□□□□ 0.2
XRCC1P18887 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
XRCC1P18887 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC16.29■□□□□ 0.2
XRCC1P18887 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
XRCC1P18887 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
XRCC1P18887 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC16.28■□□□□ 0.2
XRCC1P18887 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC16.28■□□□□ 0.2
XRCC1P18887 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC16.28■□□□□ 0.2
XRCC1P18887 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
XRCC1P18887 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
XRCC1P18887 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
XRCC1P18887 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
XRCC1P18887 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
XRCC1P18887 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
XRCC1P18887 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC16.28■□□□□ 0.2
XRCC1P18887 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC16.28■□□□□ 0.2
XRCC1P18887 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
XRCC1P18887 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
XRCC1P18887 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
XRCC1P18887 AC006277.1-201ENST00000624348 1610 ntBASIC16.28■□□□□ 0.2
XRCC1P18887 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
XRCC1P18887 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
XRCC1P18887 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC16.28■□□□□ 0.2
XRCC1P18887 CDK2AP2P3-201ENST00000422476 372 ntBASIC16.28■□□□□ 0.2
XRCC1P18887 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC16.28■□□□□ 0.2
XRCC1P18887 TIMM8BP1-201ENST00000452384 211 ntBASIC16.28■□□□□ 0.2
XRCC1P18887 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
XRCC1P18887 KRT8P48-201ENST00000515599 1220 ntBASIC16.28■□□□□ 0.2
XRCC1P18887 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
XRCC1P18887 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC16.28■□□□□ 0.2
XRCC1P18887 AC243562.1-201ENST00000560672 389 ntBASIC16.28■□□□□ 0.2
XRCC1P18887 AL135744.1-201ENST00000565098 629 ntBASIC16.28■□□□□ 0.2
XRCC1P18887 INO80E-210ENST00000567705 880 ntTSL 3 BASIC16.28■□□□□ 0.2
XRCC1P18887 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms