Protein–RNA interactions for Protein: O43679

LDB2, LIM domain-binding protein 2, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB2O43679 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LDB2O43679 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LDB2O43679 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
LDB2O43679 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC16.28■□□□□ 0.2
LDB2O43679 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC16.28■□□□□ 0.2
LDB2O43679 RPS8P6-201ENST00000426177 609 ntBASIC16.28■□□□□ 0.2
LDB2O43679 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC16.28■□□□□ 0.2
LDB2O43679 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC16.28■□□□□ 0.2
LDB2O43679 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
LDB2O43679 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC16.28■□□□□ 0.2
LDB2O43679 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC16.28■□□□□ 0.2
LDB2O43679 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC16.28■□□□□ 0.2
LDB2O43679 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC16.28■□□□□ 0.2
LDB2O43679 AC061975.2-201ENST00000581722 295 ntBASIC16.28■□□□□ 0.2
LDB2O43679 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC16.28■□□□□ 0.2
LDB2O43679 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC16.28■□□□□ 0.2
LDB2O43679 AC055717.3-201ENST00000622967 595 ntBASIC16.28■□□□□ 0.2
LDB2O43679 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC16.28■□□□□ 0.2
LDB2O43679 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC16.28■□□□□ 0.2
LDB2O43679 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LDB2O43679 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LDB2O43679 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LDB2O43679 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC16.28■□□□□ 0.2
LDB2O43679 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC16.28■□□□□ 0.2
LDB2O43679 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC16.28■□□□□ 0.2
LDB2O43679 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
LDB2O43679 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LDB2O43679 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LDB2O43679 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
LDB2O43679 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
LDB2O43679 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
LDB2O43679 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
LDB2O43679 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LDB2O43679 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC16.27■□□□□ 0.2
LDB2O43679 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LDB2O43679 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LDB2O43679 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LDB2O43679 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
LDB2O43679 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC16.27■□□□□ 0.2
LDB2O43679 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LDB2O43679 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LDB2O43679 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
LDB2O43679 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
LDB2O43679 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LDB2O43679 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
LDB2O43679 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
LDB2O43679 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC16.27■□□□□ 0.2
LDB2O43679 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC16.27■□□□□ 0.2
LDB2O43679 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
LDB2O43679 STOM-202ENST00000347359 870 ntTSL 2 BASIC16.27■□□□□ 0.2
LDB2O43679 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC16.27■□□□□ 0.2
LDB2O43679 HAUS4P1-201ENST00000406739 1145 ntBASIC16.27■□□□□ 0.2
LDB2O43679 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC16.27■□□□□ 0.2
LDB2O43679 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC16.27■□□□□ 0.2
LDB2O43679 AL592309.1-201ENST00000443127 649 ntBASIC16.27■□□□□ 0.2
LDB2O43679 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC16.27■□□□□ 0.2
LDB2O43679 DHDH-204ENST00000523250 634 ntTSL 5 BASIC16.27■□□□□ 0.2
LDB2O43679 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
LDB2O43679 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC16.27■□□□□ 0.2
LDB2O43679 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC16.27■□□□□ 0.2
LDB2O43679 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
LDB2O43679 AL513210.1-201ENST00000629608 234 ntBASIC16.27■□□□□ 0.2
LDB2O43679 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
LDB2O43679 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC16.27■□□□□ 0.19
LDB2O43679 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
LDB2O43679 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
LDB2O43679 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LDB2O43679 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC16.26■□□□□ 0.19
LDB2O43679 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC16.26■□□□□ 0.19
LDB2O43679 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
LDB2O43679 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LDB2O43679 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC16.26■□□□□ 0.19
LDB2O43679 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LDB2O43679 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC16.26■□□□□ 0.19
LDB2O43679 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
LDB2O43679 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LDB2O43679 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
LDB2O43679 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
LDB2O43679 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LDB2O43679 FAM220BP-201ENST00000377689 816 ntBASIC16.26■□□□□ 0.19
LDB2O43679 PP14571-201ENST00000404327 934 ntTSL 2 BASIC16.26■□□□□ 0.19
LDB2O43679 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
LDB2O43679 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
LDB2O43679 IGHV3-62-201ENST00000520057 340 ntBASIC16.26■□□□□ 0.19
LDB2O43679 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC16.26■□□□□ 0.19
LDB2O43679 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC16.26■□□□□ 0.19
LDB2O43679 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC16.26■□□□□ 0.19
LDB2O43679 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC16.26■□□□□ 0.19
LDB2O43679 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LDB2O43679 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC16.26■□□□□ 0.19
LDB2O43679 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LDB2O43679 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LDB2O43679 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
LDB2O43679 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC16.26■□□□□ 0.19
LDB2O43679 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
LDB2O43679 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
LDB2O43679 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LDB2O43679 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LDB2O43679 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
LDB2O43679 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms