Protein–RNA interactions for Protein: A6NKF7

TMEM88B, Transmembrane protein 88B, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM88BA6NKF7 U82695.1-201ENST00000635752 1889 ntBASIC18.62■□□□□ 0.57
TMEM88BA6NKF7 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TMEM88BA6NKF7 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TMEM88BA6NKF7 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC18.62■□□□□ 0.57
TMEM88BA6NKF7 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC18.62■□□□□ 0.57
TMEM88BA6NKF7 PXK-206ENST00000463280 2825 ntTSL 2 BASIC18.62■□□□□ 0.57
TMEM88BA6NKF7 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
TMEM88BA6NKF7 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
TMEM88BA6NKF7 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC18.61■□□□□ 0.57
TMEM88BA6NKF7 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
TMEM88BA6NKF7 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TMEM88BA6NKF7 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TMEM88BA6NKF7 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
TMEM88BA6NKF7 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TMEM88BA6NKF7 BX323043.1-201ENST00000641006 1765 ntBASIC18.61■□□□□ 0.57
TMEM88BA6NKF7 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TMEM88BA6NKF7 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC18.61■□□□□ 0.57
TMEM88BA6NKF7 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC18.61■□□□□ 0.57
TMEM88BA6NKF7 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC18.61■□□□□ 0.57
TMEM88BA6NKF7 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TMEM88BA6NKF7 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TMEM88BA6NKF7 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TMEM88BA6NKF7 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TMEM88BA6NKF7 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
TMEM88BA6NKF7 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC18.61■□□□□ 0.57
TMEM88BA6NKF7 CD8B2-202ENST00000417670 633 ntBASIC18.61■□□□□ 0.57
TMEM88BA6NKF7 AL021707.5-201ENST00000420118 461 ntTSL 5 BASIC18.61■□□□□ 0.57
TMEM88BA6NKF7 AC243961.1-201ENST00000432559 384 ntTSL 5 BASIC18.61■□□□□ 0.57
TMEM88BA6NKF7 AC245056.1-201ENST00000437631 384 ntTSL 5 BASIC18.61■□□□□ 0.57
TMEM88BA6NKF7 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
TMEM88BA6NKF7 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC18.61■□□□□ 0.57
TMEM88BA6NKF7 SDHD-202ENST00000525291 790 ntTSL 3 BASIC18.61■□□□□ 0.57
TMEM88BA6NKF7 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC18.61■□□□□ 0.57
TMEM88BA6NKF7 CFL1-214ENST00000534769 758 ntTSL 2 BASIC18.61■□□□□ 0.57
TMEM88BA6NKF7 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC18.61■□□□□ 0.57
TMEM88BA6NKF7 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC18.61■□□□□ 0.57
TMEM88BA6NKF7 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC18.61■□□□□ 0.57
TMEM88BA6NKF7 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC18.61■□□□□ 0.57
TMEM88BA6NKF7 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC18.61■□□□□ 0.57
TMEM88BA6NKF7 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TMEM88BA6NKF7 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
TMEM88BA6NKF7 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TMEM88BA6NKF7 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TMEM88BA6NKF7 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
TMEM88BA6NKF7 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TMEM88BA6NKF7 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
TMEM88BA6NKF7 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC18.6■□□□□ 0.57
TMEM88BA6NKF7 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TMEM88BA6NKF7 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TMEM88BA6NKF7 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC18.6■□□□□ 0.57
TMEM88BA6NKF7 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC18.6■□□□□ 0.57
TMEM88BA6NKF7 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
TMEM88BA6NKF7 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC18.6■□□□□ 0.57
TMEM88BA6NKF7 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC18.6■□□□□ 0.57
TMEM88BA6NKF7 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TMEM88BA6NKF7 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC18.6■□□□□ 0.57
TMEM88BA6NKF7 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
TMEM88BA6NKF7 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TMEM88BA6NKF7 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
TMEM88BA6NKF7 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TMEM88BA6NKF7 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
TMEM88BA6NKF7 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TMEM88BA6NKF7 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC18.6■□□□□ 0.57
TMEM88BA6NKF7 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TMEM88BA6NKF7 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
TMEM88BA6NKF7 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC18.6■□□□□ 0.57
TMEM88BA6NKF7 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC18.6■□□□□ 0.57
TMEM88BA6NKF7 AC116609.2-201ENST00000431542 256 ntTSL 5 BASIC18.6■□□□□ 0.57
TMEM88BA6NKF7 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC18.6■□□□□ 0.57
TMEM88BA6NKF7 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC18.6■□□□□ 0.57
TMEM88BA6NKF7 AC044849.1-201ENST00000519737 1188 ntBASIC18.6■□□□□ 0.57
TMEM88BA6NKF7 PGAM1P5-201ENST00000548011 764 ntBASIC18.6■□□□□ 0.57
TMEM88BA6NKF7 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC18.6■□□□□ 0.57
TMEM88BA6NKF7 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TMEM88BA6NKF7 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC18.6■□□□□ 0.57
TMEM88BA6NKF7 GPX4-206ENST00000588919 803 ntTSL 2 BASIC18.6■□□□□ 0.57
TMEM88BA6NKF7 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC18.6■□□□□ 0.57
TMEM88BA6NKF7 AC093813.1-201ENST00000605066 256 ntBASIC18.6■□□□□ 0.57
TMEM88BA6NKF7 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC18.6■□□□□ 0.57
TMEM88BA6NKF7 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC18.6■□□□□ 0.57
TMEM88BA6NKF7 SRSF3-208ENST00000620941 869 ntAPPRIS P1 TSL 3 BASIC18.6■□□□□ 0.57
TMEM88BA6NKF7 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TMEM88BA6NKF7 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
TMEM88BA6NKF7 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC18.6■□□□□ 0.57
TMEM88BA6NKF7 AL138709.1-201ENST00000614840 1693 ntBASIC18.6■□□□□ 0.57
TMEM88BA6NKF7 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
TMEM88BA6NKF7 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
TMEM88BA6NKF7 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
TMEM88BA6NKF7 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TMEM88BA6NKF7 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
TMEM88BA6NKF7 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC18.59■□□□□ 0.57
TMEM88BA6NKF7 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC18.59■□□□□ 0.57
TMEM88BA6NKF7 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC18.59■□□□□ 0.57
TMEM88BA6NKF7 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TMEM88BA6NKF7 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TMEM88BA6NKF7 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC18.59■□□□□ 0.57
TMEM88BA6NKF7 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
TMEM88BA6NKF7 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC18.59■□□□□ 0.57
TMEM88BA6NKF7 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
TMEM88BA6NKF7 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 63 ms