Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL20A1Q9P218 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL20A1Q9P218 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC18.31■□□□□ 0.52
COL20A1Q9P218 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL20A1Q9P218 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL20A1Q9P218 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL20A1Q9P218 BNIP3P1-202ENST00000550043 1585 ntBASIC18.3■□□□□ 0.52
COL20A1Q9P218 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL20A1Q9P218 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC18.3■□□□□ 0.52
COL20A1Q9P218 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
COL20A1Q9P218 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC18.3■□□□□ 0.52
COL20A1Q9P218 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL20A1Q9P218 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL20A1Q9P218 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC18.3■□□□□ 0.52
COL20A1Q9P218 GAPDHP21-201ENST00000450301 1010 ntBASIC18.3■□□□□ 0.52
COL20A1Q9P218 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
COL20A1Q9P218 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL20A1Q9P218 5S_rRNA.22-201ENST00000614916 106 ntBASIC18.3■□□□□ 0.52
COL20A1Q9P218 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC18.3■□□□□ 0.52
COL20A1Q9P218 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
COL20A1Q9P218 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL20A1Q9P218 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
COL20A1Q9P218 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
COL20A1Q9P218 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC18.3■□□□□ 0.52
COL20A1Q9P218 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL20A1Q9P218 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC18.3■□□□□ 0.52
COL20A1Q9P218 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL20A1Q9P218 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC18.3■□□□□ 0.52
COL20A1Q9P218 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC18.3■□□□□ 0.52
COL20A1Q9P218 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL20A1Q9P218 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL20A1Q9P218 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL20A1Q9P218 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL20A1Q9P218 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
COL20A1Q9P218 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL20A1Q9P218 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC18.29■□□□□ 0.52
COL20A1Q9P218 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL20A1Q9P218 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC18.29■□□□□ 0.52
COL20A1Q9P218 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
COL20A1Q9P218 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL20A1Q9P218 AC004987.2-201ENST00000395959 1148 ntBASIC18.29■□□□□ 0.52
COL20A1Q9P218 FO393414.2-201ENST00000405153 598 ntBASIC18.29■□□□□ 0.52
COL20A1Q9P218 COX5BP8-201ENST00000416911 349 ntBASIC18.29■□□□□ 0.52
COL20A1Q9P218 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC18.29■□□□□ 0.52
COL20A1Q9P218 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL20A1Q9P218 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL20A1Q9P218 FTH1-202ENST00000526640 786 ntTSL 2 BASIC18.29■□□□□ 0.52
COL20A1Q9P218 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL20A1Q9P218 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC18.29■□□□□ 0.52
COL20A1Q9P218 AC023310.3-201ENST00000557027 670 ntBASIC18.29■□□□□ 0.52
COL20A1Q9P218 AC100756.1-201ENST00000562736 682 ntBASIC18.29■□□□□ 0.52
COL20A1Q9P218 WASH4P-201ENST00000564273 1246 ntBASIC18.29■□□□□ 0.52
COL20A1Q9P218 AC138749.3-201ENST00000567691 622 ntBASIC18.29■□□□□ 0.52
COL20A1Q9P218 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL20A1Q9P218 AC116165.1-201ENST00000611806 668 ntBASIC18.29■□□□□ 0.52
COL20A1Q9P218 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL20A1Q9P218 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC18.29■□□□□ 0.52
COL20A1Q9P218 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL20A1Q9P218 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC18.29■□□□□ 0.52
COL20A1Q9P218 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL20A1Q9P218 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC18.29■□□□□ 0.52
COL20A1Q9P218 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
COL20A1Q9P218 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL20A1Q9P218 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
COL20A1Q9P218 AC092364.2-201ENST00000596710 2692 ntBASIC18.29■□□□□ 0.52
COL20A1Q9P218 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC18.29■□□□□ 0.52
COL20A1Q9P218 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL20A1Q9P218 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC18.29■□□□□ 0.52
COL20A1Q9P218 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
COL20A1Q9P218 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC18.29■□□□□ 0.52
COL20A1Q9P218 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL20A1Q9P218 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC18.29■□□□□ 0.52
COL20A1Q9P218 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
COL20A1Q9P218 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL20A1Q9P218 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL20A1Q9P218 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL20A1Q9P218 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL20A1Q9P218 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL20A1Q9P218 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL20A1Q9P218 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL20A1Q9P218 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
COL20A1Q9P218 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC18.28■□□□□ 0.52
COL20A1Q9P218 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL20A1Q9P218 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL20A1Q9P218 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL20A1Q9P218 PCDHA14-201ENST00000506751 2298 ntBASIC18.28■□□□□ 0.52
COL20A1Q9P218 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL20A1Q9P218 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL20A1Q9P218 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL20A1Q9P218 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
COL20A1Q9P218 EDF1-203ENST00000371649 790 ntTSL 2 BASIC18.28■□□□□ 0.52
COL20A1Q9P218 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
COL20A1Q9P218 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
COL20A1Q9P218 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC18.28■□□□□ 0.52
COL20A1Q9P218 DFFBP1-201ENST00000433250 979 ntBASIC18.28■□□□□ 0.52
COL20A1Q9P218 AL353779.1-201ENST00000434793 351 ntBASIC18.28■□□□□ 0.52
COL20A1Q9P218 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
COL20A1Q9P218 CD81-207ENST00000481687 890 ntTSL 2 BASIC18.28■□□□□ 0.52
COL20A1Q9P218 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC18.28■□□□□ 0.52
COL20A1Q9P218 COQ6-210ENST00000554920 649 ntTSL 3 BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 70.6 ms