Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.18
SSU72Q9NP77 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC16.21■□□□□ 0.18
SSU72Q9NP77 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC16.2■□□□□ 0.18
SSU72Q9NP77 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC16.2■□□□□ 0.18
SSU72Q9NP77 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC16.2■□□□□ 0.18
SSU72Q9NP77 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SSU72Q9NP77 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SSU72Q9NP77 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
SSU72Q9NP77 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC16.2■□□□□ 0.18
SSU72Q9NP77 AC012569.1-201ENST00000591191 1524 ntBASIC16.2■□□□□ 0.18
SSU72Q9NP77 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC16.2■□□□□ 0.18
SSU72Q9NP77 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC16.2■□□□□ 0.18
SSU72Q9NP77 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC16.2■□□□□ 0.18
SSU72Q9NP77 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC16.2■□□□□ 0.18
SSU72Q9NP77 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SSU72Q9NP77 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SSU72Q9NP77 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC16.2■□□□□ 0.18
SSU72Q9NP77 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SSU72Q9NP77 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SSU72Q9NP77 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC16.2■□□□□ 0.18
SSU72Q9NP77 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC16.2■□□□□ 0.18
SSU72Q9NP77 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
SSU72Q9NP77 PCED1CP-201ENST00000419887 785 ntBASIC16.2■□□□□ 0.18
SSU72Q9NP77 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
SSU72Q9NP77 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC16.2■□□□□ 0.18
SSU72Q9NP77 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC16.2■□□□□ 0.18
SSU72Q9NP77 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC16.2■□□□□ 0.18
SSU72Q9NP77 AC091076.1-201ENST00000610741 619 ntBASIC16.2■□□□□ 0.18
SSU72Q9NP77 AC066615.1-201ENST00000640911 628 ntBASIC16.2■□□□□ 0.18
SSU72Q9NP77 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
SSU72Q9NP77 CYP51A1P2-201ENST00000419457 1499 ntBASIC16.2■□□□□ 0.18
SSU72Q9NP77 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SSU72Q9NP77 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SSU72Q9NP77 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SSU72Q9NP77 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SSU72Q9NP77 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC16.2■□□□□ 0.18
SSU72Q9NP77 AC112693.3-201ENST00000624819 1983 ntBASIC16.2■□□□□ 0.18
SSU72Q9NP77 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SSU72Q9NP77 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SSU72Q9NP77 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC16.19■□□□□ 0.18
SSU72Q9NP77 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC16.19■□□□□ 0.18
SSU72Q9NP77 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
SSU72Q9NP77 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SSU72Q9NP77 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SSU72Q9NP77 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SSU72Q9NP77 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SSU72Q9NP77 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SSU72Q9NP77 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC16.19■□□□□ 0.18
SSU72Q9NP77 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC16.19■□□□□ 0.18
SSU72Q9NP77 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
SSU72Q9NP77 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SSU72Q9NP77 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC16.19■□□□□ 0.18
SSU72Q9NP77 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC16.19■□□□□ 0.18
SSU72Q9NP77 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SSU72Q9NP77 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
SSU72Q9NP77 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SSU72Q9NP77 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SSU72Q9NP77 AC026396.1-201ENST00000419388 421 ntBASIC16.19■□□□□ 0.18
SSU72Q9NP77 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC16.19■□□□□ 0.18
SSU72Q9NP77 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC16.19■□□□□ 0.18
SSU72Q9NP77 EHF-205ENST00000527935 557 ntTSL 2 BASIC16.19■□□□□ 0.18
SSU72Q9NP77 MTDHP3-201ENST00000594186 672 ntBASIC16.19■□□□□ 0.18
SSU72Q9NP77 DBP-204ENST00000599385 709 ntTSL 3 BASIC16.19■□□□□ 0.18
SSU72Q9NP77 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC16.19■□□□□ 0.18
SSU72Q9NP77 AL365330.1-201ENST00000607459 531 ntBASIC16.19■□□□□ 0.18
SSU72Q9NP77 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SSU72Q9NP77 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SSU72Q9NP77 AL355877.3-201ENST00000622820 899 ntBASIC16.19■□□□□ 0.18
SSU72Q9NP77 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC16.19■□□□□ 0.18
SSU72Q9NP77 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SSU72Q9NP77 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC16.19■□□□□ 0.18
SSU72Q9NP77 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SSU72Q9NP77 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
SSU72Q9NP77 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SSU72Q9NP77 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC16.19■□□□□ 0.18
SSU72Q9NP77 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SSU72Q9NP77 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
SSU72Q9NP77 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SSU72Q9NP77 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SSU72Q9NP77 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC16.18■□□□□ 0.18
SSU72Q9NP77 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SSU72Q9NP77 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SSU72Q9NP77 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
SSU72Q9NP77 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC16.18■□□□□ 0.18
SSU72Q9NP77 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SSU72Q9NP77 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SSU72Q9NP77 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC16.18■□□□□ 0.18
SSU72Q9NP77 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC16.18■□□□□ 0.18
SSU72Q9NP77 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC16.18■□□□□ 0.18
SSU72Q9NP77 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SSU72Q9NP77 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SSU72Q9NP77 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
SSU72Q9NP77 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
SSU72Q9NP77 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
SSU72Q9NP77 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC16.18■□□□□ 0.18
SSU72Q9NP77 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC16.18■□□□□ 0.18
SSU72Q9NP77 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
SSU72Q9NP77 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC16.18■□□□□ 0.18
SSU72Q9NP77 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
SSU72Q9NP77 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms