Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
CCDC28BQ9BUN5 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC15.93■□□□□ 0.14
CCDC28BQ9BUN5 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
CCDC28BQ9BUN5 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
CCDC28BQ9BUN5 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC15.93■□□□□ 0.14
CCDC28BQ9BUN5 ARMC10P1-201ENST00000313754 855 ntBASIC15.93■□□□□ 0.14
CCDC28BQ9BUN5 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC15.93■□□□□ 0.14
CCDC28BQ9BUN5 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
CCDC28BQ9BUN5 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC15.93■□□□□ 0.14
CCDC28BQ9BUN5 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC15.93■□□□□ 0.14
CCDC28BQ9BUN5 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
CCDC28BQ9BUN5 AC132008.2-207ENST00000454517 770 ntBASIC15.93■□□□□ 0.14
CCDC28BQ9BUN5 ARTN-206ENST00000472435 402 ntTSL 3 BASIC15.93■□□□□ 0.14
CCDC28BQ9BUN5 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC15.93■□□□□ 0.14
CCDC28BQ9BUN5 FICD-205ENST00000552758 603 ntTSL 2 BASIC15.93■□□□□ 0.14
CCDC28BQ9BUN5 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC15.93■□□□□ 0.14
CCDC28BQ9BUN5 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
CCDC28BQ9BUN5 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
CCDC28BQ9BUN5 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC15.93■□□□□ 0.14
CCDC28BQ9BUN5 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC15.93■□□□□ 0.14
CCDC28BQ9BUN5 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
CCDC28BQ9BUN5 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
CCDC28BQ9BUN5 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
CCDC28BQ9BUN5 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
CCDC28BQ9BUN5 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
CCDC28BQ9BUN5 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
CCDC28BQ9BUN5 AL359258.3-201ENST00000622910 2331 ntBASIC15.93■□□□□ 0.14
CCDC28BQ9BUN5 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
CCDC28BQ9BUN5 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC15.92■□□□□ 0.14
CCDC28BQ9BUN5 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
CCDC28BQ9BUN5 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CCDC28BQ9BUN5 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
CCDC28BQ9BUN5 AC023908.3-201ENST00000564211 3047 ntBASIC15.92■□□□□ 0.14
CCDC28BQ9BUN5 AC008677.1-201ENST00000519230 1561 ntBASIC15.92■□□□□ 0.14
CCDC28BQ9BUN5 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC15.92■□□□□ 0.14
CCDC28BQ9BUN5 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC15.92■□□□□ 0.14
CCDC28BQ9BUN5 TMBIM7P-203ENST00000641617 1718 ntBASIC15.92■□□□□ 0.14
CCDC28BQ9BUN5 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
CCDC28BQ9BUN5 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
CCDC28BQ9BUN5 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC15.92■□□□□ 0.14
CCDC28BQ9BUN5 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CCDC28BQ9BUN5 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
CCDC28BQ9BUN5 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC15.92■□□□□ 0.14
CCDC28BQ9BUN5 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC15.92■□□□□ 0.14
CCDC28BQ9BUN5 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC15.92■□□□□ 0.14
CCDC28BQ9BUN5 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC15.92■□□□□ 0.14
CCDC28BQ9BUN5 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC15.92■□□□□ 0.14
CCDC28BQ9BUN5 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC15.92■□□□□ 0.14
CCDC28BQ9BUN5 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC15.92■□□□□ 0.14
CCDC28BQ9BUN5 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC15.92■□□□□ 0.14
CCDC28BQ9BUN5 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
CCDC28BQ9BUN5 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
CCDC28BQ9BUN5 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
CCDC28BQ9BUN5 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CCDC28BQ9BUN5 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
CCDC28BQ9BUN5 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
CCDC28BQ9BUN5 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CCDC28BQ9BUN5 SLC9A3P2-201ENST00000447821 2021 ntBASIC15.92■□□□□ 0.14
CCDC28BQ9BUN5 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC15.92■□□□□ 0.14
CCDC28BQ9BUN5 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC15.92■□□□□ 0.14
CCDC28BQ9BUN5 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
CCDC28BQ9BUN5 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC15.92■□□□□ 0.14
CCDC28BQ9BUN5 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC15.92■□□□□ 0.14
CCDC28BQ9BUN5 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC15.91■□□□□ 0.14
CCDC28BQ9BUN5 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
CCDC28BQ9BUN5 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
CCDC28BQ9BUN5 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CCDC28BQ9BUN5 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC15.91■□□□□ 0.14
CCDC28BQ9BUN5 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CCDC28BQ9BUN5 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CCDC28BQ9BUN5 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
CCDC28BQ9BUN5 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CCDC28BQ9BUN5 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CCDC28BQ9BUN5 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC15.91■□□□□ 0.14
CCDC28BQ9BUN5 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CCDC28BQ9BUN5 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC15.91■□□□□ 0.14
CCDC28BQ9BUN5 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
CCDC28BQ9BUN5 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CCDC28BQ9BUN5 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CCDC28BQ9BUN5 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC15.91■□□□□ 0.14
CCDC28BQ9BUN5 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CCDC28BQ9BUN5 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC15.91■□□□□ 0.14
CCDC28BQ9BUN5 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CCDC28BQ9BUN5 RBM17P3-201ENST00000417687 1192 ntBASIC15.91■□□□□ 0.14
CCDC28BQ9BUN5 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC15.91■□□□□ 0.14
CCDC28BQ9BUN5 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC15.91■□□□□ 0.14
CCDC28BQ9BUN5 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC15.91■□□□□ 0.14
CCDC28BQ9BUN5 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC15.91■□□□□ 0.14
CCDC28BQ9BUN5 MDH2-205ENST00000461263 648 ntTSL 2 BASIC15.91■□□□□ 0.14
CCDC28BQ9BUN5 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
CCDC28BQ9BUN5 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC15.91■□□□□ 0.14
CCDC28BQ9BUN5 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC15.91■□□□□ 0.14
CCDC28BQ9BUN5 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC15.91■□□□□ 0.14
CCDC28BQ9BUN5 AL805961.1-202ENST00000641562 540 ntBASIC15.91■□□□□ 0.14
CCDC28BQ9BUN5 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
CCDC28BQ9BUN5 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CCDC28BQ9BUN5 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC15.91■□□□□ 0.14
CCDC28BQ9BUN5 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
CCDC28BQ9BUN5 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CCDC28BQ9BUN5 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms