Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC15.83■□□□□ 0.12
CLIP3Q96DZ5 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC15.83■□□□□ 0.12
CLIP3Q96DZ5 Z92544.3-201ENST00000624747 417 ntBASIC15.83■□□□□ 0.12
CLIP3Q96DZ5 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC15.83■□□□□ 0.12
CLIP3Q96DZ5 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
CLIP3Q96DZ5 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.12
CLIP3Q96DZ5 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CLIP3Q96DZ5 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CLIP3Q96DZ5 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC15.83■□□□□ 0.12
CLIP3Q96DZ5 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CLIP3Q96DZ5 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CLIP3Q96DZ5 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
CLIP3Q96DZ5 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
CLIP3Q96DZ5 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CLIP3Q96DZ5 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC15.83■□□□□ 0.12
CLIP3Q96DZ5 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC15.83■□□□□ 0.12
CLIP3Q96DZ5 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CLIP3Q96DZ5 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLIP3Q96DZ5 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLIP3Q96DZ5 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC15.82■□□□□ 0.12
CLIP3Q96DZ5 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLIP3Q96DZ5 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC15.82■□□□□ 0.12
CLIP3Q96DZ5 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC15.82■□□□□ 0.12
CLIP3Q96DZ5 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLIP3Q96DZ5 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLIP3Q96DZ5 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CLIP3Q96DZ5 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
CLIP3Q96DZ5 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
CLIP3Q96DZ5 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLIP3Q96DZ5 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLIP3Q96DZ5 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
CLIP3Q96DZ5 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC15.82■□□□□ 0.12
CLIP3Q96DZ5 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLIP3Q96DZ5 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC15.82■□□□□ 0.12
CLIP3Q96DZ5 BID-213ENST00000615414 2236 ntTSL 5 BASIC15.82■□□□□ 0.12
CLIP3Q96DZ5 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLIP3Q96DZ5 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLIP3Q96DZ5 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC15.82■□□□□ 0.12
CLIP3Q96DZ5 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLIP3Q96DZ5 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC15.82■□□□□ 0.12
CLIP3Q96DZ5 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CLIP3Q96DZ5 RPL30-202ENST00000396070 440 ntTSL 2 BASIC15.82■□□□□ 0.12
CLIP3Q96DZ5 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC15.82■□□□□ 0.12
CLIP3Q96DZ5 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC15.82■□□□□ 0.12
CLIP3Q96DZ5 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLIP3Q96DZ5 CNN2P2-201ENST00000443536 909 ntBASIC15.82■□□□□ 0.12
CLIP3Q96DZ5 CNN2P3-201ENST00000450201 906 ntBASIC15.82■□□□□ 0.12
CLIP3Q96DZ5 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC15.82■□□□□ 0.12
CLIP3Q96DZ5 AC067863.1-201ENST00000494933 530 ntBASIC15.82■□□□□ 0.12
CLIP3Q96DZ5 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC15.82■□□□□ 0.12
CLIP3Q96DZ5 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC15.82■□□□□ 0.12
CLIP3Q96DZ5 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
CLIP3Q96DZ5 VPS29-207ENST00000549970 818 ntTSL 3 BASIC15.82■□□□□ 0.12
CLIP3Q96DZ5 RPL28-205ENST00000558131 444 ntTSL 5 BASIC15.82■□□□□ 0.12
CLIP3Q96DZ5 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC15.82■□□□□ 0.12
CLIP3Q96DZ5 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLIP3Q96DZ5 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC15.82■□□□□ 0.12
CLIP3Q96DZ5 MIR4492-201ENST00000581627 80 ntBASIC15.82■□□□□ 0.12
CLIP3Q96DZ5 AC027307.2-201ENST00000591252 911 ntBASIC15.82■□□□□ 0.12
CLIP3Q96DZ5 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLIP3Q96DZ5 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
CLIP3Q96DZ5 AL136317.3-201ENST00000618497 906 ntBASIC15.82■□□□□ 0.12
CLIP3Q96DZ5 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLIP3Q96DZ5 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLIP3Q96DZ5 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
CLIP3Q96DZ5 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC15.82■□□□□ 0.12
CLIP3Q96DZ5 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC15.82■□□□□ 0.12
CLIP3Q96DZ5 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLIP3Q96DZ5 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
CLIP3Q96DZ5 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLIP3Q96DZ5 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC15.82■□□□□ 0.12
CLIP3Q96DZ5 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLIP3Q96DZ5 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLIP3Q96DZ5 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
CLIP3Q96DZ5 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC15.82■□□□□ 0.12
CLIP3Q96DZ5 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CLIP3Q96DZ5 NKILA-202ENST00000614771 2598 ntBASIC15.82■□□□□ 0.12
CLIP3Q96DZ5 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CLIP3Q96DZ5 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC15.81■□□□□ 0.12
CLIP3Q96DZ5 SYBU-235ENST00000533895 3244 ntAPPRIS P4 TSL 1 (best) BASIC15.81■□□□□ 0.12
CLIP3Q96DZ5 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CLIP3Q96DZ5 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
CLIP3Q96DZ5 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CLIP3Q96DZ5 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC15.81■□□□□ 0.12
CLIP3Q96DZ5 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CLIP3Q96DZ5 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CLIP3Q96DZ5 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CLIP3Q96DZ5 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC15.81■□□□□ 0.12
CLIP3Q96DZ5 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
CLIP3Q96DZ5 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CLIP3Q96DZ5 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
CLIP3Q96DZ5 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC15.81■□□□□ 0.12
CLIP3Q96DZ5 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CLIP3Q96DZ5 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC15.81■□□□□ 0.12
CLIP3Q96DZ5 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CLIP3Q96DZ5 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CLIP3Q96DZ5 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC15.81■□□□□ 0.12
CLIP3Q96DZ5 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CLIP3Q96DZ5 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CLIP3Q96DZ5 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC15.81■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms