Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
CHMP4CQ96CF2 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
CHMP4CQ96CF2 BSG-215ENST00000618006 1329 ntTSL 2 BASIC19.49■□□□□ 0.71
CHMP4CQ96CF2 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
CHMP4CQ96CF2 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC19.48■□□□□ 0.71
CHMP4CQ96CF2 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC19.48■□□□□ 0.71
CHMP4CQ96CF2 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CHMP4CQ96CF2 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
CHMP4CQ96CF2 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC19.48■□□□□ 0.71
CHMP4CQ96CF2 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC19.48■□□□□ 0.71
CHMP4CQ96CF2 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
CHMP4CQ96CF2 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CHMP4CQ96CF2 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC19.48■□□□□ 0.71
CHMP4CQ96CF2 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
CHMP4CQ96CF2 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC19.48■□□□□ 0.71
CHMP4CQ96CF2 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC19.48■□□□□ 0.71
CHMP4CQ96CF2 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
CHMP4CQ96CF2 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
CHMP4CQ96CF2 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC19.48■□□□□ 0.71
CHMP4CQ96CF2 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
CHMP4CQ96CF2 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CHMP4CQ96CF2 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CHMP4CQ96CF2 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC19.48■□□□□ 0.71
CHMP4CQ96CF2 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC19.48■□□□□ 0.71
CHMP4CQ96CF2 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC19.48■□□□□ 0.71
CHMP4CQ96CF2 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC19.48■□□□□ 0.71
CHMP4CQ96CF2 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC19.48■□□□□ 0.71
CHMP4CQ96CF2 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC19.48■□□□□ 0.71
CHMP4CQ96CF2 MIR3909-201ENST00000579518 119 ntBASIC19.48■□□□□ 0.71
CHMP4CQ96CF2 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC19.48■□□□□ 0.71
CHMP4CQ96CF2 AC021097.1-201ENST00000607902 574 ntBASIC19.48■□□□□ 0.71
CHMP4CQ96CF2 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC19.48■□□□□ 0.71
CHMP4CQ96CF2 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CHMP4CQ96CF2 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CHMP4CQ96CF2 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
CHMP4CQ96CF2 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC19.48■□□□□ 0.71
CHMP4CQ96CF2 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
CHMP4CQ96CF2 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CHMP4CQ96CF2 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CHMP4CQ96CF2 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CHMP4CQ96CF2 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC19.48■□□□□ 0.71
CHMP4CQ96CF2 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC19.48■□□□□ 0.71
CHMP4CQ96CF2 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
CHMP4CQ96CF2 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC19.48■□□□□ 0.71
CHMP4CQ96CF2 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
CHMP4CQ96CF2 WT1-209ENST00000530998 2421 ntTSL 2 BASIC19.47■□□□□ 0.71
CHMP4CQ96CF2 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CHMP4CQ96CF2 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC19.47■□□□□ 0.71
CHMP4CQ96CF2 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CHMP4CQ96CF2 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC19.47■□□□□ 0.71
CHMP4CQ96CF2 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC19.47■□□□□ 0.71
CHMP4CQ96CF2 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CHMP4CQ96CF2 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC19.47■□□□□ 0.71
CHMP4CQ96CF2 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC19.47■□□□□ 0.71
CHMP4CQ96CF2 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC19.47■□□□□ 0.71
CHMP4CQ96CF2 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CHMP4CQ96CF2 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CHMP4CQ96CF2 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CHMP4CQ96CF2 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
CHMP4CQ96CF2 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC19.47■□□□□ 0.71
CHMP4CQ96CF2 HNRNPFP1-201ENST00000391730 1133 ntBASIC19.47■□□□□ 0.71
CHMP4CQ96CF2 CBR1-202ENST00000399191 838 ntTSL 3 BASIC19.47■□□□□ 0.71
CHMP4CQ96CF2 AC023141.5-201ENST00000458585 616 ntBASIC19.47■□□□□ 0.71
CHMP4CQ96CF2 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC19.47■□□□□ 0.71
CHMP4CQ96CF2 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC19.47■□□□□ 0.71
CHMP4CQ96CF2 LINC00628-201ENST00000628516 1289 ntBASIC19.47■□□□□ 0.71
CHMP4CQ96CF2 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC19.47■□□□□ 0.71
CHMP4CQ96CF2 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC19.47■□□□□ 0.71
CHMP4CQ96CF2 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
CHMP4CQ96CF2 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
CHMP4CQ96CF2 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CHMP4CQ96CF2 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CHMP4CQ96CF2 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC19.47■□□□□ 0.71
CHMP4CQ96CF2 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
CHMP4CQ96CF2 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CHMP4CQ96CF2 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC19.47■□□□□ 0.71
CHMP4CQ96CF2 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CHMP4CQ96CF2 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
CHMP4CQ96CF2 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
CHMP4CQ96CF2 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CHMP4CQ96CF2 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC19.46■□□□□ 0.71
CHMP4CQ96CF2 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC19.46■□□□□ 0.71
CHMP4CQ96CF2 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CHMP4CQ96CF2 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
CHMP4CQ96CF2 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CHMP4CQ96CF2 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC19.46■□□□□ 0.71
CHMP4CQ96CF2 AC018695.7-201ENST00000624587 2492 ntBASIC19.46■□□□□ 0.71
CHMP4CQ96CF2 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CHMP4CQ96CF2 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CHMP4CQ96CF2 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CHMP4CQ96CF2 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CHMP4CQ96CF2 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CHMP4CQ96CF2 KRT18P32-201ENST00000424695 1287 ntBASIC19.46■□□□□ 0.71
CHMP4CQ96CF2 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC19.46■□□□□ 0.71
CHMP4CQ96CF2 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC19.46■□□□□ 0.71
CHMP4CQ96CF2 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CHMP4CQ96CF2 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC19.46■□□□□ 0.71
CHMP4CQ96CF2 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CHMP4CQ96CF2 RNF34-208ENST00000555076 593 ntTSL 3 BASIC19.46■□□□□ 0.71
CHMP4CQ96CF2 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC19.46■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms