Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 RNA5SP410-201ENST00000516285 106 ntBASIC15.93■□□□□ 0.14
VRK3Q8IV63 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC15.93■□□□□ 0.14
VRK3Q8IV63 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC15.93■□□□□ 0.14
VRK3Q8IV63 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
VRK3Q8IV63 AC009093.7-201ENST00000623853 1223 ntBASIC15.93■□□□□ 0.14
VRK3Q8IV63 AC010491.1-201ENST00000563101 2797 ntBASIC15.93■□□□□ 0.14
VRK3Q8IV63 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
VRK3Q8IV63 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC15.93■□□□□ 0.14
VRK3Q8IV63 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC15.93■□□□□ 0.14
VRK3Q8IV63 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC15.93■□□□□ 0.14
VRK3Q8IV63 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
VRK3Q8IV63 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC15.93■□□□□ 0.14
VRK3Q8IV63 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
VRK3Q8IV63 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC15.93■□□□□ 0.14
VRK3Q8IV63 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
VRK3Q8IV63 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
VRK3Q8IV63 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC15.93■□□□□ 0.14
VRK3Q8IV63 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
VRK3Q8IV63 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VRK3Q8IV63 AL603832.2-201ENST00000566195 2125 ntBASIC15.92■□□□□ 0.14
VRK3Q8IV63 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
VRK3Q8IV63 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VRK3Q8IV63 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
VRK3Q8IV63 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
VRK3Q8IV63 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
VRK3Q8IV63 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VRK3Q8IV63 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC15.92■□□□□ 0.14
VRK3Q8IV63 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VRK3Q8IV63 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC15.92■□□□□ 0.14
VRK3Q8IV63 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
VRK3Q8IV63 RBPMS2P1-201ENST00000437762 623 ntBASIC15.92■□□□□ 0.14
VRK3Q8IV63 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
VRK3Q8IV63 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC15.92■□□□□ 0.14
VRK3Q8IV63 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VRK3Q8IV63 ALG1L8P-201ENST00000533887 760 ntBASIC15.92■□□□□ 0.14
VRK3Q8IV63 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC15.92■□□□□ 0.14
VRK3Q8IV63 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VRK3Q8IV63 MIR4321-201ENST00000592276 80 ntBASIC15.92■□□□□ 0.14
VRK3Q8IV63 AP001160.2-201ENST00000596071 487 ntBASIC15.92■□□□□ 0.14
VRK3Q8IV63 AL365330.1-201ENST00000607459 531 ntBASIC15.92■□□□□ 0.14
VRK3Q8IV63 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
VRK3Q8IV63 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC15.92■□□□□ 0.14
VRK3Q8IV63 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
VRK3Q8IV63 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC15.92■□□□□ 0.14
VRK3Q8IV63 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
VRK3Q8IV63 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VRK3Q8IV63 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VRK3Q8IV63 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC15.92■□□□□ 0.14
VRK3Q8IV63 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VRK3Q8IV63 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VRK3Q8IV63 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VRK3Q8IV63 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VRK3Q8IV63 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
VRK3Q8IV63 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
VRK3Q8IV63 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC15.92■□□□□ 0.14
VRK3Q8IV63 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
VRK3Q8IV63 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
VRK3Q8IV63 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC15.92■□□□□ 0.14
VRK3Q8IV63 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
VRK3Q8IV63 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
VRK3Q8IV63 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC15.92■□□□□ 0.14
VRK3Q8IV63 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC15.92■□□□□ 0.14
VRK3Q8IV63 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
VRK3Q8IV63 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
VRK3Q8IV63 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
VRK3Q8IV63 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC15.91■□□□□ 0.14
VRK3Q8IV63 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC15.91■□□□□ 0.14
VRK3Q8IV63 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC15.91■□□□□ 0.14
VRK3Q8IV63 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
VRK3Q8IV63 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC15.91■□□□□ 0.14
VRK3Q8IV63 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
VRK3Q8IV63 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VRK3Q8IV63 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC15.91■□□□□ 0.14
VRK3Q8IV63 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC15.91■□□□□ 0.14
VRK3Q8IV63 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC15.91■□□□□ 0.14
VRK3Q8IV63 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC15.91■□□□□ 0.14
VRK3Q8IV63 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC15.91■□□□□ 0.14
VRK3Q8IV63 RARRES2P9-201ENST00000565168 469 ntBASIC15.91■□□□□ 0.14
VRK3Q8IV63 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC15.91■□□□□ 0.14
VRK3Q8IV63 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC15.91■□□□□ 0.14
VRK3Q8IV63 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VRK3Q8IV63 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC15.91■□□□□ 0.14
VRK3Q8IV63 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
VRK3Q8IV63 AC006538.3-201ENST00000612495 578 ntBASIC15.91■□□□□ 0.14
VRK3Q8IV63 RAB34-224ENST00000636513 888 ntTSL 5 BASIC15.91■□□□□ 0.14
VRK3Q8IV63 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
VRK3Q8IV63 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VRK3Q8IV63 SUPT20HL2-201ENST00000486479 2409 ntBASIC15.91■□□□□ 0.14
VRK3Q8IV63 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
VRK3Q8IV63 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VRK3Q8IV63 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC15.91■□□□□ 0.14
VRK3Q8IV63 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VRK3Q8IV63 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
VRK3Q8IV63 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC15.91■□□□□ 0.14
VRK3Q8IV63 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
VRK3Q8IV63 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
VRK3Q8IV63 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC15.91■□□□□ 0.14
VRK3Q8IV63 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VRK3Q8IV63 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC15.91■□□□□ 0.14
VRK3Q8IV63 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms