Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SH3RF1Q7Z6J0 AC109635.5-201ENST00000533593 962 ntBASIC18.64■□□□□ 0.57
SH3RF1Q7Z6J0 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
SH3RF1Q7Z6J0 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC18.64■□□□□ 0.57
SH3RF1Q7Z6J0 WT1-AS_2.1-201ENST00000613208 137 ntBASIC18.64■□□□□ 0.57
SH3RF1Q7Z6J0 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SH3RF1Q7Z6J0 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SH3RF1Q7Z6J0 PCGF3-213ENST00000620529 1899 ntBASIC18.64■□□□□ 0.57
SH3RF1Q7Z6J0 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
SH3RF1Q7Z6J0 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SH3RF1Q7Z6J0 CU639417.3-201ENST00000624240 1404 ntBASIC18.64■□□□□ 0.57
SH3RF1Q7Z6J0 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SH3RF1Q7Z6J0 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC18.64■□□□□ 0.57
SH3RF1Q7Z6J0 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC18.64■□□□□ 0.57
SH3RF1Q7Z6J0 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SH3RF1Q7Z6J0 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SH3RF1Q7Z6J0 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SH3RF1Q7Z6J0 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC18.63■□□□□ 0.57
SH3RF1Q7Z6J0 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SH3RF1Q7Z6J0 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SH3RF1Q7Z6J0 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC18.63■□□□□ 0.57
SH3RF1Q7Z6J0 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC18.63■□□□□ 0.57
SH3RF1Q7Z6J0 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
SH3RF1Q7Z6J0 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SH3RF1Q7Z6J0 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC18.63■□□□□ 0.57
SH3RF1Q7Z6J0 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
SH3RF1Q7Z6J0 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC18.63■□□□□ 0.57
SH3RF1Q7Z6J0 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
SH3RF1Q7Z6J0 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC18.63■□□□□ 0.57
SH3RF1Q7Z6J0 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
SH3RF1Q7Z6J0 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC18.63■□□□□ 0.57
SH3RF1Q7Z6J0 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC18.63■□□□□ 0.57
SH3RF1Q7Z6J0 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC18.63■□□□□ 0.57
SH3RF1Q7Z6J0 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
SH3RF1Q7Z6J0 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC18.63■□□□□ 0.57
SH3RF1Q7Z6J0 IGHV3-71-201ENST00000523324 359 ntBASIC18.63■□□□□ 0.57
SH3RF1Q7Z6J0 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC18.63■□□□□ 0.57
SH3RF1Q7Z6J0 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
SH3RF1Q7Z6J0 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC18.63■□□□□ 0.57
SH3RF1Q7Z6J0 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
SH3RF1Q7Z6J0 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC18.63■□□□□ 0.57
SH3RF1Q7Z6J0 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC18.63■□□□□ 0.57
SH3RF1Q7Z6J0 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC18.63■□□□□ 0.57
SH3RF1Q7Z6J0 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC18.63■□□□□ 0.57
SH3RF1Q7Z6J0 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SH3RF1Q7Z6J0 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SH3RF1Q7Z6J0 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC18.63■□□□□ 0.57
SH3RF1Q7Z6J0 AC007950.2-201ENST00000615045 2347 ntBASIC18.63■□□□□ 0.57
SH3RF1Q7Z6J0 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SH3RF1Q7Z6J0 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SH3RF1Q7Z6J0 LINC01144-201ENST00000626198 1710 ntBASIC18.63■□□□□ 0.57
SH3RF1Q7Z6J0 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC18.63■□□□□ 0.57
SH3RF1Q7Z6J0 SLC9A3P2-201ENST00000447821 2021 ntBASIC18.62■□□□□ 0.57
SH3RF1Q7Z6J0 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SH3RF1Q7Z6J0 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC18.62■□□□□ 0.57
SH3RF1Q7Z6J0 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SH3RF1Q7Z6J0 AGK-211ENST00000629555 2765 ntTSL 5 BASIC18.62■□□□□ 0.57
SH3RF1Q7Z6J0 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SH3RF1Q7Z6J0 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SH3RF1Q7Z6J0 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SH3RF1Q7Z6J0 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SH3RF1Q7Z6J0 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
SH3RF1Q7Z6J0 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SH3RF1Q7Z6J0 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SH3RF1Q7Z6J0 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC18.62■□□□□ 0.57
SH3RF1Q7Z6J0 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC18.62■□□□□ 0.57
SH3RF1Q7Z6J0 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC18.62■□□□□ 0.57
SH3RF1Q7Z6J0 HILS1-202ENST00000545329 423 ntBASIC18.62■□□□□ 0.57
SH3RF1Q7Z6J0 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
SH3RF1Q7Z6J0 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SH3RF1Q7Z6J0 IFT20-216ENST00000588477 774 ntTSL 5 BASIC18.62■□□□□ 0.57
SH3RF1Q7Z6J0 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC18.62■□□□□ 0.57
SH3RF1Q7Z6J0 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SH3RF1Q7Z6J0 SPDYE12P-201ENST00000618416 771 ntBASIC18.62■□□□□ 0.57
SH3RF1Q7Z6J0 MIR6799-201ENST00000620297 69 ntBASIC18.62■□□□□ 0.57
SH3RF1Q7Z6J0 AP001350.2-201ENST00000625104 1094 ntBASIC18.62■□□□□ 0.57
SH3RF1Q7Z6J0 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SH3RF1Q7Z6J0 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SH3RF1Q7Z6J0 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC18.62■□□□□ 0.57
SH3RF1Q7Z6J0 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC18.62■□□□□ 0.57
SH3RF1Q7Z6J0 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SH3RF1Q7Z6J0 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SH3RF1Q7Z6J0 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC18.62■□□□□ 0.57
SH3RF1Q7Z6J0 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SH3RF1Q7Z6J0 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SH3RF1Q7Z6J0 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC18.62■□□□□ 0.57
SH3RF1Q7Z6J0 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC18.62■□□□□ 0.57
SH3RF1Q7Z6J0 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SH3RF1Q7Z6J0 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SH3RF1Q7Z6J0 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
SH3RF1Q7Z6J0 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SH3RF1Q7Z6J0 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SH3RF1Q7Z6J0 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SH3RF1Q7Z6J0 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC18.61■□□□□ 0.57
SH3RF1Q7Z6J0 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SH3RF1Q7Z6J0 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC18.61■□□□□ 0.57
SH3RF1Q7Z6J0 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SH3RF1Q7Z6J0 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
SH3RF1Q7Z6J0 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC18.61■□□□□ 0.57
SH3RF1Q7Z6J0 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 55.5 ms