Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 AC026471.1-201ENST00000564629 3026 ntBASIC21.83■■□□□ 1.08
NPHP3Q7Z494 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.08
NPHP3Q7Z494 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.08
NPHP3Q7Z494 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.08
NPHP3Q7Z494 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
NPHP3Q7Z494 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.08
NPHP3Q7Z494 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.08
NPHP3Q7Z494 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC21.83■■□□□ 1.08
NPHP3Q7Z494 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
NPHP3Q7Z494 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
NPHP3Q7Z494 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
NPHP3Q7Z494 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
NPHP3Q7Z494 CNN2P8-201ENST00000421872 913 ntBASIC21.82■■□□□ 1.08
NPHP3Q7Z494 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
NPHP3Q7Z494 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC21.82■■□□□ 1.08
NPHP3Q7Z494 ARTN-209ENST00000479128 471 ntTSL 3 BASIC21.82■■□□□ 1.08
NPHP3Q7Z494 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
NPHP3Q7Z494 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC21.82■■□□□ 1.08
NPHP3Q7Z494 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC21.82■■□□□ 1.08
NPHP3Q7Z494 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
NPHP3Q7Z494 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC21.82■■□□□ 1.08
NPHP3Q7Z494 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC21.82■■□□□ 1.08
NPHP3Q7Z494 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
NPHP3Q7Z494 AC067852.2-201ENST00000590513 2313 ntBASIC21.82■■□□□ 1.08
NPHP3Q7Z494 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC21.82■■□□□ 1.08
NPHP3Q7Z494 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
NPHP3Q7Z494 LETM1P2-201ENST00000597330 2178 ntBASIC21.82■■□□□ 1.08
NPHP3Q7Z494 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
NPHP3Q7Z494 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC21.82■■□□□ 1.08
NPHP3Q7Z494 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC21.82■■□□□ 1.08
NPHP3Q7Z494 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC21.82■■□□□ 1.08
NPHP3Q7Z494 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC21.82■■□□□ 1.08
NPHP3Q7Z494 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC21.82■■□□□ 1.08
NPHP3Q7Z494 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
NPHP3Q7Z494 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
NPHP3Q7Z494 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC21.81■■□□□ 1.08
NPHP3Q7Z494 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC21.81■■□□□ 1.08
NPHP3Q7Z494 OARD1-212ENST00000482515 832 ntTSL 2 BASIC21.81■■□□□ 1.08
NPHP3Q7Z494 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC21.81■■□□□ 1.08
NPHP3Q7Z494 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC21.81■■□□□ 1.08
NPHP3Q7Z494 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC21.81■■□□□ 1.08
NPHP3Q7Z494 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
NPHP3Q7Z494 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC21.81■■□□□ 1.08
NPHP3Q7Z494 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
NPHP3Q7Z494 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
NPHP3Q7Z494 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC21.81■■□□□ 1.08
NPHP3Q7Z494 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC21.81■■□□□ 1.08
NPHP3Q7Z494 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
NPHP3Q7Z494 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
NPHP3Q7Z494 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC21.81■■□□□ 1.08
NPHP3Q7Z494 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC21.81■■□□□ 1.08
NPHP3Q7Z494 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC21.81■■□□□ 1.08
NPHP3Q7Z494 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC21.81■■□□□ 1.08
NPHP3Q7Z494 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
NPHP3Q7Z494 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
NPHP3Q7Z494 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
NPHP3Q7Z494 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
NPHP3Q7Z494 BRF1-202ENST00000379932 884 ntTSL 5 BASIC21.8■■□□□ 1.08
NPHP3Q7Z494 C2orf27AP3-201ENST00000434123 579 ntBASIC21.8■■□□□ 1.08
NPHP3Q7Z494 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC21.8■■□□□ 1.08
NPHP3Q7Z494 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC21.8■■□□□ 1.08
NPHP3Q7Z494 AC023310.1-201ENST00000554836 735 ntBASIC21.8■■□□□ 1.08
NPHP3Q7Z494 AC243562.2-201ENST00000561247 970 ntBASIC21.8■■□□□ 1.08
NPHP3Q7Z494 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC21.8■■□□□ 1.08
NPHP3Q7Z494 PRKN-211ENST00000615065 261 ntTSL 5 BASIC21.8■■□□□ 1.08
NPHP3Q7Z494 AL354718.3-201ENST00000616414 581 ntBASIC21.8■■□□□ 1.08
NPHP3Q7Z494 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
NPHP3Q7Z494 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
NPHP3Q7Z494 CR382287.1-201ENST00000623954 586 ntBASIC21.8■■□□□ 1.08
NPHP3Q7Z494 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
NPHP3Q7Z494 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
NPHP3Q7Z494 AL607033.1-201ENST00000623900 1599 ntBASIC21.8■■□□□ 1.08
NPHP3Q7Z494 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
NPHP3Q7Z494 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
NPHP3Q7Z494 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
NPHP3Q7Z494 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
NPHP3Q7Z494 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC21.8■■□□□ 1.08
NPHP3Q7Z494 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
NPHP3Q7Z494 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC21.8■■□□□ 1.08
NPHP3Q7Z494 LINC01144-201ENST00000626198 1710 ntBASIC21.8■■□□□ 1.08
NPHP3Q7Z494 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
NPHP3Q7Z494 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
NPHP3Q7Z494 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
NPHP3Q7Z494 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC21.8■■□□□ 1.08
NPHP3Q7Z494 FST-202ENST00000396947 2538 ntTSL 5 BASIC21.8■■□□□ 1.08
NPHP3Q7Z494 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
NPHP3Q7Z494 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
NPHP3Q7Z494 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
NPHP3Q7Z494 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
NPHP3Q7Z494 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC21.8■■□□□ 1.08
NPHP3Q7Z494 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
NPHP3Q7Z494 Z93015.1-201ENST00000451718 390 ntBASIC21.8■■□□□ 1.08
NPHP3Q7Z494 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC21.8■■□□□ 1.08
NPHP3Q7Z494 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
NPHP3Q7Z494 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
NPHP3Q7Z494 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC21.8■■□□□ 1.08
NPHP3Q7Z494 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC21.79■■□□□ 1.08
NPHP3Q7Z494 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC21.79■■□□□ 1.08
NPHP3Q7Z494 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC21.79■■□□□ 1.08
NPHP3Q7Z494 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 67.9 ms