Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC20.25■□□□□ 0.83
RC3H1Q5TC82 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC20.25■□□□□ 0.83
RC3H1Q5TC82 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
RC3H1Q5TC82 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
RC3H1Q5TC82 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RC3H1Q5TC82 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RC3H1Q5TC82 USE1-206ENST00000595101 1776 ntTSL 2 BASIC20.24■□□□□ 0.83
RC3H1Q5TC82 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
RC3H1Q5TC82 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
RC3H1Q5TC82 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RC3H1Q5TC82 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RC3H1Q5TC82 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC20.24■□□□□ 0.83
RC3H1Q5TC82 VDAC1P7-201ENST00000462417 847 ntBASIC20.24■□□□□ 0.83
RC3H1Q5TC82 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC20.24■□□□□ 0.83
RC3H1Q5TC82 SLED1-202ENST00000512051 380 ntBASIC20.24■□□□□ 0.83
RC3H1Q5TC82 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC20.24■□□□□ 0.83
RC3H1Q5TC82 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC20.24■□□□□ 0.83
RC3H1Q5TC82 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
RC3H1Q5TC82 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
RC3H1Q5TC82 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
RC3H1Q5TC82 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC20.24■□□□□ 0.83
RC3H1Q5TC82 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC20.24■□□□□ 0.83
RC3H1Q5TC82 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RC3H1Q5TC82 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RC3H1Q5TC82 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
RC3H1Q5TC82 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
RC3H1Q5TC82 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC20.23■□□□□ 0.83
RC3H1Q5TC82 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RC3H1Q5TC82 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
RC3H1Q5TC82 MSTO2P-201ENST00000314835 1709 ntBASIC20.23■□□□□ 0.83
RC3H1Q5TC82 ACKR1-201ENST00000368121 1240 ntBASIC20.23■□□□□ 0.83
RC3H1Q5TC82 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
RC3H1Q5TC82 BRF1-202ENST00000379932 884 ntTSL 5 BASIC20.23■□□□□ 0.83
RC3H1Q5TC82 AC004945.1-201ENST00000416738 983 ntBASIC20.23■□□□□ 0.83
RC3H1Q5TC82 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC20.23■□□□□ 0.83
RC3H1Q5TC82 GOLGA2P4-201ENST00000441462 777 ntBASIC20.23■□□□□ 0.83
RC3H1Q5TC82 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC20.23■□□□□ 0.83
RC3H1Q5TC82 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC20.23■□□□□ 0.83
RC3H1Q5TC82 RPL13AP20-201ENST00000459725 609 ntBASIC20.23■□□□□ 0.83
RC3H1Q5TC82 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC20.23■□□□□ 0.83
RC3H1Q5TC82 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC20.23■□□□□ 0.83
RC3H1Q5TC82 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
RC3H1Q5TC82 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC20.23■□□□□ 0.83
RC3H1Q5TC82 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC20.23■□□□□ 0.83
RC3H1Q5TC82 KRT90P-201ENST00000549264 1064 ntBASIC20.23■□□□□ 0.83
RC3H1Q5TC82 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
RC3H1Q5TC82 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC20.23■□□□□ 0.83
RC3H1Q5TC82 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
RC3H1Q5TC82 AC000095.1-201ENST00000603208 874 ntBASIC20.23■□□□□ 0.83
RC3H1Q5TC82 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC20.23■□□□□ 0.83
RC3H1Q5TC82 AC244669.2-201ENST00000612320 853 ntBASIC20.23■□□□□ 0.83
RC3H1Q5TC82 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
RC3H1Q5TC82 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC20.23■□□□□ 0.83
RC3H1Q5TC82 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RC3H1Q5TC82 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RC3H1Q5TC82 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC20.23■□□□□ 0.83
RC3H1Q5TC82 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC20.23■□□□□ 0.83
RC3H1Q5TC82 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RC3H1Q5TC82 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
RC3H1Q5TC82 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
RC3H1Q5TC82 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RC3H1Q5TC82 ZBTB45P2-201ENST00000452245 1531 ntBASIC20.22■□□□□ 0.83
RC3H1Q5TC82 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RC3H1Q5TC82 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RC3H1Q5TC82 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RC3H1Q5TC82 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
RC3H1Q5TC82 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RC3H1Q5TC82 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
RC3H1Q5TC82 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RC3H1Q5TC82 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
RC3H1Q5TC82 AC136604.1-201ENST00000418535 575 ntBASIC20.22■□□□□ 0.83
RC3H1Q5TC82 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RC3H1Q5TC82 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC20.22■□□□□ 0.83
RC3H1Q5TC82 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC20.22■□□□□ 0.83
RC3H1Q5TC82 AC106760.1-201ENST00000508690 800 ntBASIC20.22■□□□□ 0.83
RC3H1Q5TC82 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
RC3H1Q5TC82 GNRHR2-203ENST00000581100 1187 ntBASIC20.22■□□□□ 0.83
RC3H1Q5TC82 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC20.22■□□□□ 0.83
RC3H1Q5TC82 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC20.22■□□□□ 0.83
RC3H1Q5TC82 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RC3H1Q5TC82 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
RC3H1Q5TC82 AGER-206ENST00000375070 1463 ntTSL 5 BASIC20.22■□□□□ 0.83
RC3H1Q5TC82 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RC3H1Q5TC82 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
RC3H1Q5TC82 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
RC3H1Q5TC82 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RC3H1Q5TC82 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RC3H1Q5TC82 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
RC3H1Q5TC82 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
RC3H1Q5TC82 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC20.21■□□□□ 0.83
RC3H1Q5TC82 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC20.21■□□□□ 0.83
RC3H1Q5TC82 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
RC3H1Q5TC82 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC20.21■□□□□ 0.83
RC3H1Q5TC82 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RC3H1Q5TC82 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC20.21■□□□□ 0.83
RC3H1Q5TC82 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RC3H1Q5TC82 TPO-206ENST00000382269 1155 ntTSL 5 BASIC20.21■□□□□ 0.83
RC3H1Q5TC82 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
RC3H1Q5TC82 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
RC3H1Q5TC82 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms