Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
SOX3P41225 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC15.41■□□□□ 0.06
SOX3P41225 AL671277.1-201ENST00000429656 993 ntBASIC15.41■□□□□ 0.06
SOX3P41225 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
SOX3P41225 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
SOX3P41225 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
SOX3P41225 STARD13-205ENST00000439831 945 ntTSL 2 BASIC15.41■□□□□ 0.06
SOX3P41225 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC15.41■□□□□ 0.06
SOX3P41225 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
SOX3P41225 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
SOX3P41225 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC15.41■□□□□ 0.06
SOX3P41225 AC109635.5-201ENST00000533593 962 ntBASIC15.41■□□□□ 0.06
SOX3P41225 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC15.41■□□□□ 0.06
SOX3P41225 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
SOX3P41225 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC15.41■□□□□ 0.06
SOX3P41225 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC15.41■□□□□ 0.06
SOX3P41225 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
SOX3P41225 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
SOX3P41225 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC15.41■□□□□ 0.06
SOX3P41225 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC15.41■□□□□ 0.06
SOX3P41225 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
SOX3P41225 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC15.41■□□□□ 0.06
SOX3P41225 AL161645.1-201ENST00000622716 1255 ntBASIC15.41■□□□□ 0.06
SOX3P41225 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC15.41■□□□□ 0.06
SOX3P41225 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
SOX3P41225 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC15.41■□□□□ 0.06
SOX3P41225 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
SOX3P41225 HLA-A-202ENST00000376806 1854 ntBASIC15.41■□□□□ 0.06
SOX3P41225 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
SOX3P41225 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
SOX3P41225 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC15.41■□□□□ 0.06
SOX3P41225 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC15.41■□□□□ 0.06
SOX3P41225 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SOX3P41225 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
SOX3P41225 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC15.41■□□□□ 0.06
SOX3P41225 SLC9A3P2-201ENST00000447821 2021 ntBASIC15.41■□□□□ 0.06
SOX3P41225 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
SOX3P41225 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
SOX3P41225 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
SOX3P41225 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC15.41■□□□□ 0.06
SOX3P41225 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SOX3P41225 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SOX3P41225 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SOX3P41225 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC15.4■□□□□ 0.06
SOX3P41225 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC15.4■□□□□ 0.06
SOX3P41225 AC006277.1-201ENST00000624348 1610 ntBASIC15.4■□□□□ 0.06
SOX3P41225 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
SOX3P41225 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SOX3P41225 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SOX3P41225 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC15.4■□□□□ 0.06
SOX3P41225 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SOX3P41225 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC15.4■□□□□ 0.06
SOX3P41225 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SOX3P41225 TIMM8BP1-201ENST00000452384 211 ntBASIC15.4■□□□□ 0.06
SOX3P41225 AP000344.2-201ENST00000512987 629 ntBASIC15.4■□□□□ 0.06
SOX3P41225 RARRES2P8-201ENST00000566335 367 ntBASIC15.4■□□□□ 0.06
SOX3P41225 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC15.4■□□□□ 0.06
SOX3P41225 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC15.4■□□□□ 0.06
SOX3P41225 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC15.4■□□□□ 0.06
SOX3P41225 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SOX3P41225 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SOX3P41225 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
SOX3P41225 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
SOX3P41225 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC15.4■□□□□ 0.06
SOX3P41225 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC15.4■□□□□ 0.06
SOX3P41225 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC15.4■□□□□ 0.06
SOX3P41225 AL365203.3-201ENST00000609742 2057 ntBASIC15.4■□□□□ 0.06
SOX3P41225 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SOX3P41225 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC15.4■□□□□ 0.06
SOX3P41225 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SOX3P41225 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC15.4■□□□□ 0.06
SOX3P41225 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SOX3P41225 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC15.4■□□□□ 0.06
SOX3P41225 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SOX3P41225 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC15.4■□□□□ 0.06
SOX3P41225 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC15.4■□□□□ 0.06
SOX3P41225 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.06
SOX3P41225 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC15.39■□□□□ 0.06
SOX3P41225 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC15.39■□□□□ 0.05
SOX3P41225 OVCH1-AS1-204ENST00000641955 5529 ntBASIC15.39■□□□□ 0.05
SOX3P41225 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SOX3P41225 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
SOX3P41225 AC023824.1-201ENST00000562945 2975 ntBASIC15.39■□□□□ 0.05
SOX3P41225 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SOX3P41225 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SOX3P41225 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC15.39■□□□□ 0.05
SOX3P41225 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SOX3P41225 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SOX3P41225 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SOX3P41225 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC15.39■□□□□ 0.05
SOX3P41225 ALOX12P2-203ENST00000570921 1945 ntBASIC15.39■□□□□ 0.05
SOX3P41225 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC15.39■□□□□ 0.05
SOX3P41225 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
SOX3P41225 SLC9A7P1-201ENST00000554295 3311 ntBASIC15.39■□□□□ 0.05
SOX3P41225 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SOX3P41225 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
SOX3P41225 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SOX3P41225 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
SOX3P41225 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SOX3P41225 STOM-202ENST00000347359 870 ntTSL 2 BASIC15.39■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms