Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.1
MSX2P35548 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC15.64■□□□□ 0.09
MSX2P35548 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
MSX2P35548 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC15.64■□□□□ 0.09
MSX2P35548 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
MSX2P35548 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
MSX2P35548 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC15.64■□□□□ 0.09
MSX2P35548 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
MSX2P35548 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
MSX2P35548 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
MSX2P35548 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
MSX2P35548 AC063952.2-201ENST00000498792 1227 ntBASIC15.64■□□□□ 0.09
MSX2P35548 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC15.64■□□□□ 0.09
MSX2P35548 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC15.64■□□□□ 0.09
MSX2P35548 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC15.64■□□□□ 0.09
MSX2P35548 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC15.64■□□□□ 0.09
MSX2P35548 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC15.64■□□□□ 0.09
MSX2P35548 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC15.64■□□□□ 0.09
MSX2P35548 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC15.64■□□□□ 0.09
MSX2P35548 RBM42-202ENST00000586618 771 ntTSL 3 BASIC15.64■□□□□ 0.09
MSX2P35548 AC020658.6-201ENST00000623564 1870 ntBASIC15.64■□□□□ 0.09
MSX2P35548 AC131009.4-201ENST00000624048 1740 ntBASIC15.64■□□□□ 0.09
MSX2P35548 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
MSX2P35548 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
MSX2P35548 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
MSX2P35548 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
MSX2P35548 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC15.64■□□□□ 0.09
MSX2P35548 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
MSX2P35548 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
MSX2P35548 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
MSX2P35548 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
MSX2P35548 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
MSX2P35548 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
MSX2P35548 MECR-202ENST00000373791 2416 ntTSL 2 BASIC15.64■□□□□ 0.09
MSX2P35548 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
MSX2P35548 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC15.64■□□□□ 0.09
MSX2P35548 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
MSX2P35548 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
MSX2P35548 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
MSX2P35548 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
MSX2P35548 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
MSX2P35548 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
MSX2P35548 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC15.63■□□□□ 0.09
MSX2P35548 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC15.63■□□□□ 0.09
MSX2P35548 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
MSX2P35548 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
MSX2P35548 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
MSX2P35548 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC15.63■□□□□ 0.09
MSX2P35548 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
MSX2P35548 AC026748.1-201ENST00000624349 3251 ntBASIC15.63■□□□□ 0.09
MSX2P35548 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
MSX2P35548 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC15.63■□□□□ 0.09
MSX2P35548 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC15.63■□□□□ 0.09
MSX2P35548 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC15.63■□□□□ 0.09
MSX2P35548 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC15.63■□□□□ 0.09
MSX2P35548 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
MSX2P35548 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
MSX2P35548 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
MSX2P35548 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC15.63■□□□□ 0.09
MSX2P35548 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
MSX2P35548 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC15.63■□□□□ 0.09
MSX2P35548 SIGLEC29P-201ENST00000599873 1114 ntBASIC15.63■□□□□ 0.09
MSX2P35548 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC15.63■□□□□ 0.09
MSX2P35548 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
MSX2P35548 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
MSX2P35548 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC15.63■□□□□ 0.09
MSX2P35548 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC15.63■□□□□ 0.09
MSX2P35548 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC15.63■□□□□ 0.09
MSX2P35548 AC091951.1-201ENST00000512854 2465 ntBASIC15.63■□□□□ 0.09
MSX2P35548 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC15.63■□□□□ 0.09
MSX2P35548 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
MSX2P35548 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
MSX2P35548 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
MSX2P35548 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
MSX2P35548 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
MSX2P35548 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC15.63■□□□□ 0.09
MSX2P35548 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC15.63■□□□□ 0.09
MSX2P35548 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC15.63■□□□□ 0.09
MSX2P35548 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
MSX2P35548 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC15.63■□□□□ 0.09
MSX2P35548 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC15.63■□□□□ 0.09
MSX2P35548 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC15.63■□□□□ 0.09
MSX2P35548 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
MSX2P35548 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
MSX2P35548 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
MSX2P35548 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
MSX2P35548 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
MSX2P35548 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC15.62■□□□□ 0.09
MSX2P35548 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
MSX2P35548 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
MSX2P35548 AC079776.2-201ENST00000641154 1609 ntBASIC15.62■□□□□ 0.09
MSX2P35548 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
MSX2P35548 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC15.62■□□□□ 0.09
MSX2P35548 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC15.62■□□□□ 0.09
MSX2P35548 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC15.62■□□□□ 0.09
MSX2P35548 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
MSX2P35548 SOD2-201ENST00000337404 991 ntTSL 2 BASIC15.62■□□□□ 0.09
MSX2P35548 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
MSX2P35548 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC15.62■□□□□ 0.09
MSX2P35548 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms