Protein–RNA interactions for Protein: P31645

SLC6A4, Sodium-dependent serotonin transporter, humanhuman

Predictions only

Length 630 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A4P31645 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC16.69■□□□□ 0.26
SLC6A4P31645 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SLC6A4P31645 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
SLC6A4P31645 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
SLC6A4P31645 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SLC6A4P31645 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
SLC6A4P31645 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC16.68■□□□□ 0.26
SLC6A4P31645 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC16.68■□□□□ 0.26
SLC6A4P31645 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SLC6A4P31645 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SLC6A4P31645 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
SLC6A4P31645 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SLC6A4P31645 FAM8A3P-201ENST00000427218 844 ntBASIC16.68■□□□□ 0.26
SLC6A4P31645 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC16.68■□□□□ 0.26
SLC6A4P31645 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC16.68■□□□□ 0.26
SLC6A4P31645 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC16.68■□□□□ 0.26
SLC6A4P31645 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC16.68■□□□□ 0.26
SLC6A4P31645 INGX-202ENST00000489074 768 ntBASIC16.68■□□□□ 0.26
SLC6A4P31645 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC16.68■□□□□ 0.26
SLC6A4P31645 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC16.68■□□□□ 0.26
SLC6A4P31645 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC16.68■□□□□ 0.26
SLC6A4P31645 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SLC6A4P31645 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC16.68■□□□□ 0.26
SLC6A4P31645 PCDH8P1-201ENST00000428983 2773 ntBASIC16.68■□□□□ 0.26
SLC6A4P31645 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
SLC6A4P31645 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SLC6A4P31645 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC16.68■□□□□ 0.26
SLC6A4P31645 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
SLC6A4P31645 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC16.68■□□□□ 0.26
SLC6A4P31645 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
SLC6A4P31645 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SLC6A4P31645 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SLC6A4P31645 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SLC6A4P31645 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
SLC6A4P31645 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SLC6A4P31645 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC16.67■□□□□ 0.26
SLC6A4P31645 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC16.67■□□□□ 0.26
SLC6A4P31645 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SLC6A4P31645 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC16.67■□□□□ 0.26
SLC6A4P31645 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
SLC6A4P31645 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SLC6A4P31645 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC16.67■□□□□ 0.26
SLC6A4P31645 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC16.67■□□□□ 0.26
SLC6A4P31645 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
SLC6A4P31645 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
SLC6A4P31645 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SLC6A4P31645 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC16.67■□□□□ 0.26
SLC6A4P31645 RPS19-201ENST00000221975 500 ntTSL 3 BASIC16.67■□□□□ 0.26
SLC6A4P31645 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC16.67■□□□□ 0.26
SLC6A4P31645 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SLC6A4P31645 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC16.67■□□□□ 0.26
SLC6A4P31645 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SLC6A4P31645 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SLC6A4P31645 HNRNPA3P1-201ENST00000401429 1139 ntBASIC16.67■□□□□ 0.26
SLC6A4P31645 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC16.67■□□□□ 0.26
SLC6A4P31645 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SLC6A4P31645 AL139010.1-201ENST00000454878 894 ntBASIC16.67■□□□□ 0.26
SLC6A4P31645 HNRNPA3P5-201ENST00000455201 833 ntBASIC16.67■□□□□ 0.26
SLC6A4P31645 LY6E-204ENST00000519546 971 ntTSL 2 BASIC16.67■□□□□ 0.26
SLC6A4P31645 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC16.67■□□□□ 0.26
SLC6A4P31645 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
SLC6A4P31645 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC16.67■□□□□ 0.26
SLC6A4P31645 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC16.67■□□□□ 0.26
SLC6A4P31645 AC026979.3-201ENST00000607315 403 ntBASIC16.67■□□□□ 0.26
SLC6A4P31645 AJ011932.1-201ENST00000621707 465 ntBASIC16.67■□□□□ 0.26
SLC6A4P31645 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC16.67■□□□□ 0.26
SLC6A4P31645 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC16.67■□□□□ 0.26
SLC6A4P31645 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
SLC6A4P31645 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SLC6A4P31645 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SLC6A4P31645 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SLC6A4P31645 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SLC6A4P31645 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC16.67■□□□□ 0.26
SLC6A4P31645 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
SLC6A4P31645 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
SLC6A4P31645 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
SLC6A4P31645 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
SLC6A4P31645 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC16.67■□□□□ 0.26
SLC6A4P31645 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SLC6A4P31645 AC084018.2-201ENST00000613093 2607 ntBASIC16.66■□□□□ 0.26
SLC6A4P31645 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC16.66■□□□□ 0.26
SLC6A4P31645 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SLC6A4P31645 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SLC6A4P31645 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SLC6A4P31645 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SLC6A4P31645 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC16.66■□□□□ 0.26
SLC6A4P31645 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SLC6A4P31645 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC16.66■□□□□ 0.26
SLC6A4P31645 AC006449.6-201ENST00000612330 2296 ntBASIC16.66■□□□□ 0.26
SLC6A4P31645 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SLC6A4P31645 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC16.66■□□□□ 0.26
SLC6A4P31645 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SLC6A4P31645 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC16.66■□□□□ 0.26
SLC6A4P31645 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
SLC6A4P31645 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC16.66■□□□□ 0.26
SLC6A4P31645 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC16.66■□□□□ 0.26
SLC6A4P31645 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
SLC6A4P31645 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SLC6A4P31645 MIR661-201ENST00000384842 89 ntBASIC16.66■□□□□ 0.26
SLC6A4P31645 MRPS18AP1-201ENST00000414458 589 ntBASIC16.66■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 71.3 ms