Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
CUX2O14529 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC27.35■■□□□ 1.97
CUX2O14529 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
CUX2O14529 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC27.35■■□□□ 1.97
CUX2O14529 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
CUX2O14529 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
CUX2O14529 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC27.35■■□□□ 1.97
CUX2O14529 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
CUX2O14529 NOC2LP1-201ENST00000450578 752 ntBASIC27.35■■□□□ 1.97
CUX2O14529 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
CUX2O14529 OSMR-AS1-202ENST00000512519 837 ntTSL 2 BASIC27.35■■□□□ 1.97
CUX2O14529 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC27.35■■□□□ 1.97
CUX2O14529 AC100778.2-201ENST00000580150 483 ntTSL 5 BASIC27.35■■□□□ 1.97
CUX2O14529 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC27.35■■□□□ 1.97
CUX2O14529 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
CUX2O14529 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
CUX2O14529 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC27.35■■□□□ 1.97
CUX2O14529 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC27.35■■□□□ 1.97
CUX2O14529 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
CUX2O14529 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC27.34■■□□□ 1.97
CUX2O14529 RHBDF1P1-201ENST00000427504 1941 ntBASIC27.34■■□□□ 1.97
CUX2O14529 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC27.34■■□□□ 1.97
CUX2O14529 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
CUX2O14529 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
CUX2O14529 PSMB4-201ENST00000290541 964 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
CUX2O14529 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC27.34■■□□□ 1.97
CUX2O14529 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC27.34■■□□□ 1.97
CUX2O14529 AC022217.1-201ENST00000521069 738 ntBASIC27.34■■□□□ 1.97
CUX2O14529 AC132192.2-201ENST00000596206 1147 ntBASIC27.34■■□□□ 1.97
CUX2O14529 AL645939.5-201ENST00000606834 243 ntBASIC27.34■■□□□ 1.97
CUX2O14529 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC27.34■■□□□ 1.97
CUX2O14529 AC091544.8-201ENST00000619490 361 ntBASIC27.34■■□□□ 1.97
CUX2O14529 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC27.34■■□□□ 1.97
CUX2O14529 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC27.34■■□□□ 1.97
CUX2O14529 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
CUX2O14529 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
CUX2O14529 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
CUX2O14529 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
CUX2O14529 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
CUX2O14529 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC27.34■■□□□ 1.97
CUX2O14529 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
CUX2O14529 AGER-206ENST00000375070 1463 ntTSL 5 BASIC27.33■■□□□ 1.97
CUX2O14529 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC27.33■■□□□ 1.97
CUX2O14529 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC27.33■■□□□ 1.97
CUX2O14529 KRT8P39-201ENST00000396270 1433 ntBASIC27.33■■□□□ 1.97
CUX2O14529 AC004973.1-201ENST00000413240 635 ntTSL 3 BASIC27.33■■□□□ 1.97
CUX2O14529 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
CUX2O14529 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
CUX2O14529 TUBBP5-203ENST00000508529 1334 ntBASIC27.33■■□□□ 1.97
CUX2O14529 RN7SL774P-201ENST00000577467 290 ntBASIC27.33■■□□□ 1.97
CUX2O14529 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC27.33■■□□□ 1.97
CUX2O14529 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC27.33■■□□□ 1.97
CUX2O14529 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC27.33■■□□□ 1.97
CUX2O14529 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC27.33■■□□□ 1.97
CUX2O14529 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
CUX2O14529 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
CUX2O14529 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
CUX2O14529 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
CUX2O14529 AC092053.1-201ENST00000605787 1936 ntBASIC27.33■■□□□ 1.97
CUX2O14529 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
CUX2O14529 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC27.33■■□□□ 1.96
CUX2O14529 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
CUX2O14529 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC27.32■■□□□ 1.96
CUX2O14529 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC27.32■■□□□ 1.96
CUX2O14529 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
CUX2O14529 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
CUX2O14529 VDAC1P7-201ENST00000462417 847 ntBASIC27.32■■□□□ 1.96
CUX2O14529 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC27.32■■□□□ 1.96
CUX2O14529 AC009119.2-201ENST00000561562 723 ntAPPRIS P1 TSL 2 BASIC27.32■■□□□ 1.96
CUX2O14529 AL845331.2-201ENST00000561882 1044 ntAPPRIS P1 TSL 5 BASIC27.32■■□□□ 1.96
CUX2O14529 ZSCAN10-205ENST00000572548 618 ntTSL 3 BASIC27.32■■□□□ 1.96
CUX2O14529 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC27.32■■□□□ 1.96
CUX2O14529 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC27.32■■□□□ 1.96
CUX2O14529 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
CUX2O14529 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC27.32■■□□□ 1.96
CUX2O14529 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC27.32■■□□□ 1.96
CUX2O14529 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC27.32■■□□□ 1.96
CUX2O14529 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
CUX2O14529 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC27.32■■□□□ 1.96
CUX2O14529 CYP51A1P3-201ENST00000400072 1428 ntBASIC27.32■■□□□ 1.96
CUX2O14529 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC27.32■■□□□ 1.96
CUX2O14529 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
CUX2O14529 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC27.32■■□□□ 1.96
CUX2O14529 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC27.32■■□□□ 1.96
CUX2O14529 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC27.32■■□□□ 1.96
CUX2O14529 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
CUX2O14529 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC27.32■■□□□ 1.96
CUX2O14529 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC27.32■■□□□ 1.96
CUX2O14529 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC27.32■■□□□ 1.96
CUX2O14529 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC27.31■■□□□ 1.96
CUX2O14529 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC27.31■■□□□ 1.96
CUX2O14529 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC27.31■■□□□ 1.96
CUX2O14529 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC27.31■■□□□ 1.96
CUX2O14529 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC27.31■■□□□ 1.96
CUX2O14529 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
CUX2O14529 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC27.31■■□□□ 1.96
CUX2O14529 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC27.31■■□□□ 1.96
CUX2O14529 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
CUX2O14529 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC27.31■■□□□ 1.96
CUX2O14529 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms