Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
SDCBPO00560 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC13.96□□□□□ -0.18
SDCBPO00560 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
SDCBPO00560 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
SDCBPO00560 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC13.96□□□□□ -0.18
SDCBPO00560 TOP3BP1-201ENST00000420768 1380 ntBASIC13.96□□□□□ -0.18
SDCBPO00560 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
SDCBPO00560 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC13.95□□□□□ -0.18
SDCBPO00560 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC13.95□□□□□ -0.18
SDCBPO00560 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
SDCBPO00560 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SDCBPO00560 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC13.95□□□□□ -0.18
SDCBPO00560 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC13.95□□□□□ -0.18
SDCBPO00560 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SDCBPO00560 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SDCBPO00560 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SDCBPO00560 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SDCBPO00560 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
SDCBPO00560 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SDCBPO00560 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC13.95□□□□□ -0.18
SDCBPO00560 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC13.95□□□□□ -0.18
SDCBPO00560 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
SDCBPO00560 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SDCBPO00560 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
SDCBPO00560 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
SDCBPO00560 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
SDCBPO00560 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SDCBPO00560 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SDCBPO00560 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SDCBPO00560 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SDCBPO00560 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC13.95□□□□□ -0.18
SDCBPO00560 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC13.95□□□□□ -0.18
SDCBPO00560 ELK2BP-201ENST00000415014 1224 ntBASIC13.95□□□□□ -0.18
SDCBPO00560 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
SDCBPO00560 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SDCBPO00560 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC13.95□□□□□ -0.18
SDCBPO00560 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC13.95□□□□□ -0.18
SDCBPO00560 OR7E14P-202ENST00000530490 1290 ntBASIC13.95□□□□□ -0.18
SDCBPO00560 TOLLIP-AS1-201ENST00000530897 939 ntBASIC13.95□□□□□ -0.18
SDCBPO00560 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SDCBPO00560 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC13.95□□□□□ -0.18
SDCBPO00560 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC13.95□□□□□ -0.18
SDCBPO00560 AC107918.4-202ENST00000641623 219 ntBASIC13.95□□□□□ -0.18
SDCBPO00560 AF228730.7-201ENST00000641842 219 ntBASIC13.95□□□□□ -0.18
SDCBPO00560 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
SDCBPO00560 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SDCBPO00560 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
SDCBPO00560 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC13.95□□□□□ -0.18
SDCBPO00560 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SDCBPO00560 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC13.95□□□□□ -0.18
SDCBPO00560 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC13.95□□□□□ -0.18
SDCBPO00560 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SDCBPO00560 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SDCBPO00560 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC13.95□□□□□ -0.18
SDCBPO00560 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SDCBPO00560 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
SDCBPO00560 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
SDCBPO00560 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC13.94□□□□□ -0.18
SDCBPO00560 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
SDCBPO00560 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
SDCBPO00560 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
SDCBPO00560 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC13.94□□□□□ -0.18
SDCBPO00560 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
SDCBPO00560 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
SDCBPO00560 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC13.94□□□□□ -0.18
SDCBPO00560 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC13.94□□□□□ -0.18
SDCBPO00560 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
SDCBPO00560 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC13.94□□□□□ -0.18
SDCBPO00560 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
SDCBPO00560 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
SDCBPO00560 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC13.94□□□□□ -0.18
SDCBPO00560 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC13.94□□□□□ -0.18
SDCBPO00560 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
SDCBPO00560 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
SDCBPO00560 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC13.94□□□□□ -0.18
SDCBPO00560 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
SDCBPO00560 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC13.94□□□□□ -0.18
SDCBPO00560 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC13.94□□□□□ -0.18
SDCBPO00560 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC13.94□□□□□ -0.18
SDCBPO00560 KRT8P39-201ENST00000396270 1433 ntBASIC13.94□□□□□ -0.18
SDCBPO00560 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
SDCBPO00560 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC13.94□□□□□ -0.18
SDCBPO00560 RPS2P1-201ENST00000434010 821 ntBASIC13.94□□□□□ -0.18
SDCBPO00560 MST1L-201ENST00000442552 2185 ntBASIC13.94□□□□□ -0.18
SDCBPO00560 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
SDCBPO00560 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC13.94□□□□□ -0.18
SDCBPO00560 UNC93B7-201ENST00000509439 705 ntBASIC13.94□□□□□ -0.18
SDCBPO00560 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
SDCBPO00560 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC13.94□□□□□ -0.18
SDCBPO00560 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC13.94□□□□□ -0.18
SDCBPO00560 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC13.94□□□□□ -0.18
SDCBPO00560 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC13.94□□□□□ -0.18
SDCBPO00560 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC13.94□□□□□ -0.18
SDCBPO00560 PAM16-208ENST00000573553 722 ntTSL 2 BASIC13.94□□□□□ -0.18
SDCBPO00560 AC006504.4-201ENST00000592118 1568 ntBASIC13.94□□□□□ -0.18
SDCBPO00560 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC13.94□□□□□ -0.18
SDCBPO00560 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC13.94□□□□□ -0.18
SDCBPO00560 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
SDCBPO00560 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
SDCBPO00560 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms