Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS29Q9UBQ0 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
VPS29Q9UBQ0 AL590627.1-203ENST00000421194 1026 ntBASIC15.69■□□□□ 0.1
VPS29Q9UBQ0 FDX1P1-201ENST00000449115 551 ntBASIC15.69■□□□□ 0.1
VPS29Q9UBQ0 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC15.69■□□□□ 0.1
VPS29Q9UBQ0 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC15.69■□□□□ 0.1
VPS29Q9UBQ0 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
VPS29Q9UBQ0 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC15.69■□□□□ 0.1
VPS29Q9UBQ0 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS29Q9UBQ0 RELA-227ENST00000615805 2236 ntTSL 5 BASIC15.69■□□□□ 0.1
VPS29Q9UBQ0 ZNF259P1-201ENST00000407656 1365 ntBASIC15.69■□□□□ 0.1
VPS29Q9UBQ0 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS29Q9UBQ0 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
VPS29Q9UBQ0 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS29Q9UBQ0 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
VPS29Q9UBQ0 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
VPS29Q9UBQ0 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC15.69■□□□□ 0.1
VPS29Q9UBQ0 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS29Q9UBQ0 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
VPS29Q9UBQ0 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS29Q9UBQ0 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
VPS29Q9UBQ0 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VPS29Q9UBQ0 REM2-202ENST00000536884 1331 ntTSL 2 BASIC15.68■□□□□ 0.1
VPS29Q9UBQ0 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
VPS29Q9UBQ0 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
VPS29Q9UBQ0 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
VPS29Q9UBQ0 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC15.68■□□□□ 0.1
VPS29Q9UBQ0 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC15.68■□□□□ 0.1
VPS29Q9UBQ0 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
VPS29Q9UBQ0 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC15.68■□□□□ 0.1
VPS29Q9UBQ0 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VPS29Q9UBQ0 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC15.68■□□□□ 0.1
VPS29Q9UBQ0 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC15.68■□□□□ 0.1
VPS29Q9UBQ0 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VPS29Q9UBQ0 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC15.68■□□□□ 0.1
VPS29Q9UBQ0 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
VPS29Q9UBQ0 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC15.68■□□□□ 0.1
VPS29Q9UBQ0 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VPS29Q9UBQ0 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC15.68■□□□□ 0.1
VPS29Q9UBQ0 AC016027.1-202ENST00000607927 1699 ntBASIC15.68■□□□□ 0.1
VPS29Q9UBQ0 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC15.68■□□□□ 0.1
VPS29Q9UBQ0 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC15.68■□□□□ 0.1
VPS29Q9UBQ0 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
VPS29Q9UBQ0 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
VPS29Q9UBQ0 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
VPS29Q9UBQ0 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC15.68■□□□□ 0.1
VPS29Q9UBQ0 HS6ST1P1-201ENST00000481504 1234 ntBASIC15.68■□□□□ 0.1
VPS29Q9UBQ0 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC15.68■□□□□ 0.1
VPS29Q9UBQ0 SMN2-210ENST00000511812 867 ntTSL 2 BASIC15.68■□□□□ 0.1
VPS29Q9UBQ0 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC15.68■□□□□ 0.1
VPS29Q9UBQ0 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VPS29Q9UBQ0 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC15.68■□□□□ 0.1
VPS29Q9UBQ0 QPRT-203ENST00000562473 579 ntTSL 3 BASIC15.68■□□□□ 0.1
VPS29Q9UBQ0 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC15.68■□□□□ 0.1
VPS29Q9UBQ0 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC15.68■□□□□ 0.1
VPS29Q9UBQ0 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
VPS29Q9UBQ0 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC15.68■□□□□ 0.1
VPS29Q9UBQ0 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
VPS29Q9UBQ0 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VPS29Q9UBQ0 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC15.68■□□□□ 0.1
VPS29Q9UBQ0 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VPS29Q9UBQ0 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
VPS29Q9UBQ0 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC15.68■□□□□ 0.1
VPS29Q9UBQ0 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
VPS29Q9UBQ0 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC15.68■□□□□ 0.1
VPS29Q9UBQ0 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS29Q9UBQ0 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC15.67■□□□□ 0.1
VPS29Q9UBQ0 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
VPS29Q9UBQ0 NFIC-211ENST00000641145 8399 ntBASIC15.67■□□□□ 0.1
VPS29Q9UBQ0 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC15.67■□□□□ 0.1
VPS29Q9UBQ0 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS29Q9UBQ0 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
VPS29Q9UBQ0 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC15.67■□□□□ 0.1
VPS29Q9UBQ0 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC15.67■□□□□ 0.1
VPS29Q9UBQ0 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
VPS29Q9UBQ0 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC15.67■□□□□ 0.1
VPS29Q9UBQ0 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC15.67■□□□□ 0.1
VPS29Q9UBQ0 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC15.67■□□□□ 0.1
VPS29Q9UBQ0 AC112504.1-201ENST00000623415 1841 ntBASIC15.67■□□□□ 0.1
VPS29Q9UBQ0 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS29Q9UBQ0 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS29Q9UBQ0 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS29Q9UBQ0 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC15.67■□□□□ 0.1
VPS29Q9UBQ0 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
VPS29Q9UBQ0 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
VPS29Q9UBQ0 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC15.67■□□□□ 0.1
VPS29Q9UBQ0 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
VPS29Q9UBQ0 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC15.67■□□□□ 0.1
VPS29Q9UBQ0 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
VPS29Q9UBQ0 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC15.67■□□□□ 0.1
VPS29Q9UBQ0 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC15.67■□□□□ 0.1
VPS29Q9UBQ0 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC15.67■□□□□ 0.1
VPS29Q9UBQ0 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC15.67■□□□□ 0.1
VPS29Q9UBQ0 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
VPS29Q9UBQ0 AL161645.1-201ENST00000622716 1255 ntBASIC15.67■□□□□ 0.1
VPS29Q9UBQ0 AC069224.1-201ENST00000566372 1715 ntBASIC15.67■□□□□ 0.1
VPS29Q9UBQ0 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
VPS29Q9UBQ0 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS29Q9UBQ0 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS29Q9UBQ0 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms