Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 RBPMS2P1-201ENST00000437762 623 ntBASIC16.24■□□□□ 0.19
TRIM39Q9HCM9 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM39Q9HCM9 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC16.24■□□□□ 0.19
TRIM39Q9HCM9 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC16.24■□□□□ 0.19
TRIM39Q9HCM9 AC098859.1-201ENST00000502915 1238 ntBASIC16.24■□□□□ 0.19
TRIM39Q9HCM9 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC16.24■□□□□ 0.19
TRIM39Q9HCM9 SPTSSB-204ENST00000617024 1292 ntBASIC16.24■□□□□ 0.19
TRIM39Q9HCM9 LINC00628-201ENST00000628516 1289 ntBASIC16.24■□□□□ 0.19
TRIM39Q9HCM9 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM39Q9HCM9 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM39Q9HCM9 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM39Q9HCM9 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC16.24■□□□□ 0.19
TRIM39Q9HCM9 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM39Q9HCM9 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM39Q9HCM9 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC16.24■□□□□ 0.19
TRIM39Q9HCM9 AL118508.1-201ENST00000613502 2345 ntBASIC16.24■□□□□ 0.19
TRIM39Q9HCM9 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
TRIM39Q9HCM9 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM39Q9HCM9 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM39Q9HCM9 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
TRIM39Q9HCM9 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM39Q9HCM9 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM39Q9HCM9 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC16.24■□□□□ 0.19
TRIM39Q9HCM9 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC16.24■□□□□ 0.19
TRIM39Q9HCM9 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM39Q9HCM9 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM39Q9HCM9 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC16.24■□□□□ 0.19
TRIM39Q9HCM9 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRIM39Q9HCM9 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRIM39Q9HCM9 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC16.23■□□□□ 0.19
TRIM39Q9HCM9 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC16.23■□□□□ 0.19
TRIM39Q9HCM9 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
TRIM39Q9HCM9 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
TRIM39Q9HCM9 PCDH8P1-201ENST00000428983 2773 ntBASIC16.23■□□□□ 0.19
TRIM39Q9HCM9 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRIM39Q9HCM9 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC16.23■□□□□ 0.19
TRIM39Q9HCM9 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
TRIM39Q9HCM9 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
TRIM39Q9HCM9 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
TRIM39Q9HCM9 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
TRIM39Q9HCM9 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRIM39Q9HCM9 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
TRIM39Q9HCM9 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRIM39Q9HCM9 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRIM39Q9HCM9 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC16.23■□□□□ 0.19
TRIM39Q9HCM9 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
TRIM39Q9HCM9 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
TRIM39Q9HCM9 RPL30-202ENST00000396070 440 ntTSL 2 BASIC16.23■□□□□ 0.19
TRIM39Q9HCM9 GGCT-205ENST00000409436 954 ntTSL 3 BASIC16.23■□□□□ 0.19
TRIM39Q9HCM9 GPS2P2-201ENST00000430745 888 ntBASIC16.23■□□□□ 0.19
TRIM39Q9HCM9 METTL21AP1-201ENST00000438852 635 ntBASIC16.23■□□□□ 0.19
TRIM39Q9HCM9 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRIM39Q9HCM9 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
TRIM39Q9HCM9 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
TRIM39Q9HCM9 AC004449.1-201ENST00000564240 433 ntBASIC16.23■□□□□ 0.19
TRIM39Q9HCM9 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC16.23■□□□□ 0.19
TRIM39Q9HCM9 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
TRIM39Q9HCM9 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
TRIM39Q9HCM9 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRIM39Q9HCM9 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRIM39Q9HCM9 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC16.23■□□□□ 0.19
TRIM39Q9HCM9 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
TRIM39Q9HCM9 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
TRIM39Q9HCM9 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRIM39Q9HCM9 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
TRIM39Q9HCM9 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRIM39Q9HCM9 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRIM39Q9HCM9 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRIM39Q9HCM9 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
TRIM39Q9HCM9 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRIM39Q9HCM9 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC16.22■□□□□ 0.19
TRIM39Q9HCM9 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM39Q9HCM9 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC16.22■□□□□ 0.19
TRIM39Q9HCM9 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM39Q9HCM9 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC16.22■□□□□ 0.19
TRIM39Q9HCM9 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC16.22■□□□□ 0.19
TRIM39Q9HCM9 AC005622.1-201ENST00000636801 1703 ntBASIC16.22■□□□□ 0.19
TRIM39Q9HCM9 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM39Q9HCM9 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM39Q9HCM9 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM39Q9HCM9 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM39Q9HCM9 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC16.22■□□□□ 0.19
TRIM39Q9HCM9 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC16.22■□□□□ 0.19
TRIM39Q9HCM9 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
TRIM39Q9HCM9 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM39Q9HCM9 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM39Q9HCM9 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM39Q9HCM9 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM39Q9HCM9 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC16.22■□□□□ 0.19
TRIM39Q9HCM9 PON3-203ENST00000427422 894 ntTSL 3 BASIC16.22■□□□□ 0.19
TRIM39Q9HCM9 POU5F1P6-201ENST00000466990 990 ntBASIC16.22■□□□□ 0.19
TRIM39Q9HCM9 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM39Q9HCM9 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM39Q9HCM9 ALG1L8P-201ENST00000533887 760 ntBASIC16.22■□□□□ 0.19
TRIM39Q9HCM9 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC16.22■□□□□ 0.19
TRIM39Q9HCM9 AC025678.2-201ENST00000562061 970 ntBASIC16.22■□□□□ 0.19
TRIM39Q9HCM9 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC16.22■□□□□ 0.19
TRIM39Q9HCM9 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC16.22■□□□□ 0.19
TRIM39Q9HCM9 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC16.22■□□□□ 0.19
TRIM39Q9HCM9 AP001059.3-201ENST00000619053 235 ntBASIC16.22■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms