Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
MMP28Q9H239 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
MMP28Q9H239 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC14.5□□□□□ -0.09
MMP28Q9H239 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
MMP28Q9H239 GGT4P-201ENST00000623672 1708 ntBASIC14.5□□□□□ -0.09
MMP28Q9H239 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
MMP28Q9H239 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
MMP28Q9H239 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC14.5□□□□□ -0.09
MMP28Q9H239 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC14.5□□□□□ -0.09
MMP28Q9H239 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC14.5□□□□□ -0.09
MMP28Q9H239 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC14.5□□□□□ -0.09
MMP28Q9H239 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
MMP28Q9H239 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC14.5□□□□□ -0.09
MMP28Q9H239 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
MMP28Q9H239 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC14.5□□□□□ -0.09
MMP28Q9H239 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
MMP28Q9H239 AC136621.1-201ENST00000624017 2304 ntBASIC14.5□□□□□ -0.09
MMP28Q9H239 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
MMP28Q9H239 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
MMP28Q9H239 AC079781.5-202ENST00000641784 3743 ntBASIC14.5□□□□□ -0.09
MMP28Q9H239 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
MMP28Q9H239 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
MMP28Q9H239 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
MMP28Q9H239 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC14.5□□□□□ -0.09
MMP28Q9H239 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC14.5□□□□□ -0.09
MMP28Q9H239 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
MMP28Q9H239 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
MMP28Q9H239 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
MMP28Q9H239 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
MMP28Q9H239 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
MMP28Q9H239 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC14.5□□□□□ -0.09
MMP28Q9H239 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
MMP28Q9H239 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
MMP28Q9H239 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
MMP28Q9H239 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
MMP28Q9H239 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
MMP28Q9H239 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
MMP28Q9H239 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
MMP28Q9H239 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
MMP28Q9H239 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
MMP28Q9H239 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC14.49□□□□□ -0.09
MMP28Q9H239 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
MMP28Q9H239 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC14.49□□□□□ -0.09
MMP28Q9H239 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
MMP28Q9H239 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
MMP28Q9H239 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC14.49□□□□□ -0.09
MMP28Q9H239 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC14.49□□□□□ -0.09
MMP28Q9H239 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
MMP28Q9H239 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
MMP28Q9H239 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
MMP28Q9H239 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
MMP28Q9H239 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
MMP28Q9H239 AC006449.6-201ENST00000612330 2296 ntBASIC14.49□□□□□ -0.09
MMP28Q9H239 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
MMP28Q9H239 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
MMP28Q9H239 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC14.49□□□□□ -0.09
MMP28Q9H239 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
MMP28Q9H239 ACE-203ENST00000413513 2237 ntTSL 2 BASIC14.49□□□□□ -0.09
MMP28Q9H239 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
MMP28Q9H239 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
MMP28Q9H239 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC14.49□□□□□ -0.09
MMP28Q9H239 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC14.49□□□□□ -0.09
MMP28Q9H239 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
MMP28Q9H239 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
MMP28Q9H239 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
MMP28Q9H239 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
MMP28Q9H239 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC14.49□□□□□ -0.09
MMP28Q9H239 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
MMP28Q9H239 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
MMP28Q9H239 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC14.49□□□□□ -0.09
MMP28Q9H239 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
MMP28Q9H239 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
MMP28Q9H239 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
MMP28Q9H239 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
MMP28Q9H239 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
MMP28Q9H239 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
MMP28Q9H239 DRAXINP1-201ENST00000437611 948 ntBASIC14.49□□□□□ -0.09
MMP28Q9H239 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
MMP28Q9H239 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
MMP28Q9H239 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC14.49□□□□□ -0.09
MMP28Q9H239 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
MMP28Q9H239 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC14.49□□□□□ -0.09
MMP28Q9H239 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC14.49□□□□□ -0.09
MMP28Q9H239 AP002414.4-201ENST00000589764 1148 ntBASIC14.49□□□□□ -0.09
MMP28Q9H239 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
MMP28Q9H239 NPAP1P7-201ENST00000613027 823 ntBASIC14.49□□□□□ -0.09
MMP28Q9H239 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
MMP28Q9H239 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
MMP28Q9H239 AC007292.2-201ENST00000593524 1812 ntBASIC14.49□□□□□ -0.09
MMP28Q9H239 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
MMP28Q9H239 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
MMP28Q9H239 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
MMP28Q9H239 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC14.49□□□□□ -0.09
MMP28Q9H239 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC14.49□□□□□ -0.09
MMP28Q9H239 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
MMP28Q9H239 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC14.49□□□□□ -0.09
MMP28Q9H239 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
MMP28Q9H239 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
MMP28Q9H239 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC14.49□□□□□ -0.09
MMP28Q9H239 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms