Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL25A1Q9BXS0 AP000997.3-201ENST00000623333 2250 ntBASIC16.16■□□□□ 0.18
COL25A1Q9BXS0 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL25A1Q9BXS0 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL25A1Q9BXS0 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC16.16■□□□□ 0.18
COL25A1Q9BXS0 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL25A1Q9BXS0 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL25A1Q9BXS0 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL25A1Q9BXS0 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL25A1Q9BXS0 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL25A1Q9BXS0 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC16.15■□□□□ 0.18
COL25A1Q9BXS0 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL25A1Q9BXS0 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC16.15■□□□□ 0.18
COL25A1Q9BXS0 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL25A1Q9BXS0 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL25A1Q9BXS0 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL25A1Q9BXS0 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
COL25A1Q9BXS0 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
COL25A1Q9BXS0 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL25A1Q9BXS0 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL25A1Q9BXS0 ATP5J-202ENST00000400087 826 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
COL25A1Q9BXS0 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC16.15■□□□□ 0.18
COL25A1Q9BXS0 RAD51C-203ENST00000421782 567 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL25A1Q9BXS0 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
COL25A1Q9BXS0 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL25A1Q9BXS0 MDH2-205ENST00000461263 648 ntTSL 2 BASIC16.15■□□□□ 0.18
COL25A1Q9BXS0 NDUFA3-214ENST00000485876 963 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL25A1Q9BXS0 ZNF879-202ENST00000519896 543 ntTSL 4 BASIC16.15■□□□□ 0.18
COL25A1Q9BXS0 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC16.15■□□□□ 0.18
COL25A1Q9BXS0 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL25A1Q9BXS0 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC16.15■□□□□ 0.18
COL25A1Q9BXS0 FOS-204ENST00000554617 796 ntTSL 2 BASIC16.15■□□□□ 0.18
COL25A1Q9BXS0 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC16.15■□□□□ 0.18
COL25A1Q9BXS0 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
COL25A1Q9BXS0 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC16.15■□□□□ 0.18
COL25A1Q9BXS0 EID1-202ENST00000560490 584 ntTSL 3 BASIC16.15■□□□□ 0.18
COL25A1Q9BXS0 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC16.15■□□□□ 0.18
COL25A1Q9BXS0 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC16.15■□□□□ 0.18
COL25A1Q9BXS0 AC107373.2-201ENST00000607735 490 ntBASIC16.15■□□□□ 0.18
COL25A1Q9BXS0 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL25A1Q9BXS0 AP005019.2-201ENST00000615104 511 ntBASIC16.15■□□□□ 0.18
COL25A1Q9BXS0 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
COL25A1Q9BXS0 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL25A1Q9BXS0 AC004554.1-201ENST00000422830 1468 ntBASIC16.15■□□□□ 0.18
COL25A1Q9BXS0 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC16.15■□□□□ 0.18
COL25A1Q9BXS0 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL25A1Q9BXS0 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL25A1Q9BXS0 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL25A1Q9BXS0 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
COL25A1Q9BXS0 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC16.14■□□□□ 0.18
COL25A1Q9BXS0 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL25A1Q9BXS0 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
COL25A1Q9BXS0 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC16.14■□□□□ 0.17
COL25A1Q9BXS0 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
COL25A1Q9BXS0 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL25A1Q9BXS0 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL25A1Q9BXS0 SLC25A20-202ENST00000430379 1576 ntTSL 3 BASIC16.14■□□□□ 0.17
COL25A1Q9BXS0 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL25A1Q9BXS0 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL25A1Q9BXS0 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
COL25A1Q9BXS0 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
COL25A1Q9BXS0 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
COL25A1Q9BXS0 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC16.14■□□□□ 0.17
COL25A1Q9BXS0 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL25A1Q9BXS0 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL25A1Q9BXS0 LYSMD4-203ENST00000378904 2122 ntBASIC16.14■□□□□ 0.17
COL25A1Q9BXS0 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
COL25A1Q9BXS0 CTHRC1-202ENST00000415886 571 ntTSL 2 BASIC16.14■□□□□ 0.17
COL25A1Q9BXS0 AL451069.3-201ENST00000450206 1013 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
COL25A1Q9BXS0 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC16.14■□□□□ 0.17
COL25A1Q9BXS0 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC16.14■□□□□ 0.17
COL25A1Q9BXS0 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC16.14■□□□□ 0.17
COL25A1Q9BXS0 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC16.14■□□□□ 0.17
COL25A1Q9BXS0 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC16.14■□□□□ 0.17
COL25A1Q9BXS0 AC006158.1-201ENST00000610661 249 ntBASIC16.14■□□□□ 0.17
COL25A1Q9BXS0 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC16.14■□□□□ 0.17
COL25A1Q9BXS0 DDX5-235ENST00000630471 473 ntTSL 4 BASIC16.14■□□□□ 0.17
COL25A1Q9BXS0 LINC00431-202ENST00000636375 159 ntBASIC16.14■□□□□ 0.17
COL25A1Q9BXS0 AL671710.1-201ENST00000610245 2349 ntBASIC16.14■□□□□ 0.17
COL25A1Q9BXS0 PCDHAC2-203ENST00000615316 3011 ntBASIC16.14■□□□□ 0.17
COL25A1Q9BXS0 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL25A1Q9BXS0 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
COL25A1Q9BXS0 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC16.14■□□□□ 0.17
COL25A1Q9BXS0 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
COL25A1Q9BXS0 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL25A1Q9BXS0 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
COL25A1Q9BXS0 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
COL25A1Q9BXS0 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC16.14■□□□□ 0.17
COL25A1Q9BXS0 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL25A1Q9BXS0 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC16.13■□□□□ 0.17
COL25A1Q9BXS0 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC16.13■□□□□ 0.17
COL25A1Q9BXS0 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL25A1Q9BXS0 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL25A1Q9BXS0 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL25A1Q9BXS0 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC16.13■□□□□ 0.17
COL25A1Q9BXS0 AC073592.3-201ENST00000625118 1834 ntBASIC16.13■□□□□ 0.17
COL25A1Q9BXS0 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC16.13■□□□□ 0.17
COL25A1Q9BXS0 HIST1H1D-201ENST00000244534 666 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
COL25A1Q9BXS0 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL25A1Q9BXS0 CMTM5-201ENST00000339180 1173 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms