Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC17.89■□□□□ 0.45
TRAIPQ9BWF2 LITAF-210ENST00000571976 548 ntTSL 2 BASIC17.89■□□□□ 0.45
TRAIPQ9BWF2 LITAF-214ENST00000574703 486 ntTSL 2 BASIC17.89■□□□□ 0.45
TRAIPQ9BWF2 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC17.89■□□□□ 0.45
TRAIPQ9BWF2 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC17.89■□□□□ 0.45
TRAIPQ9BWF2 AL138828.2-201ENST00000615812 383 ntBASIC17.89■□□□□ 0.45
TRAIPQ9BWF2 SPDYE12P-201ENST00000618416 771 ntBASIC17.89■□□□□ 0.45
TRAIPQ9BWF2 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TRAIPQ9BWF2 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
TRAIPQ9BWF2 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
TRAIPQ9BWF2 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
TRAIPQ9BWF2 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
TRAIPQ9BWF2 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC17.89■□□□□ 0.45
TRAIPQ9BWF2 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC17.89■□□□□ 0.45
TRAIPQ9BWF2 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
TRAIPQ9BWF2 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
TRAIPQ9BWF2 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC17.89■□□□□ 0.45
TRAIPQ9BWF2 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TRAIPQ9BWF2 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC17.89■□□□□ 0.45
TRAIPQ9BWF2 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TRAIPQ9BWF2 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
TRAIPQ9BWF2 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TRAIPQ9BWF2 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC17.89■□□□□ 0.45
TRAIPQ9BWF2 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC17.89■□□□□ 0.45
TRAIPQ9BWF2 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
TRAIPQ9BWF2 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
TRAIPQ9BWF2 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TRAIPQ9BWF2 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC17.88■□□□□ 0.45
TRAIPQ9BWF2 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TRAIPQ9BWF2 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
TRAIPQ9BWF2 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC17.88■□□□□ 0.45
TRAIPQ9BWF2 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
TRAIPQ9BWF2 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
TRAIPQ9BWF2 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TRAIPQ9BWF2 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
TRAIPQ9BWF2 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC17.88■□□□□ 0.45
TRAIPQ9BWF2 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
TRAIPQ9BWF2 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
TRAIPQ9BWF2 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
TRAIPQ9BWF2 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
TRAIPQ9BWF2 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TRAIPQ9BWF2 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TRAIPQ9BWF2 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
TRAIPQ9BWF2 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC17.88■□□□□ 0.45
TRAIPQ9BWF2 POLD4-211ENST00000539074 714 ntTSL 3 BASIC17.88■□□□□ 0.45
TRAIPQ9BWF2 LINC02560-201ENST00000596379 459 ntBASIC17.88■□□□□ 0.45
TRAIPQ9BWF2 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
TRAIPQ9BWF2 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
TRAIPQ9BWF2 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TRAIPQ9BWF2 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TRAIPQ9BWF2 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TRAIPQ9BWF2 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC17.88■□□□□ 0.45
TRAIPQ9BWF2 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
TRAIPQ9BWF2 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
TRAIPQ9BWF2 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
TRAIPQ9BWF2 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TRAIPQ9BWF2 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC17.88■□□□□ 0.45
TRAIPQ9BWF2 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC17.88■□□□□ 0.45
TRAIPQ9BWF2 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC17.88■□□□□ 0.45
TRAIPQ9BWF2 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC17.88■□□□□ 0.45
TRAIPQ9BWF2 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
TRAIPQ9BWF2 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TRAIPQ9BWF2 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
TRAIPQ9BWF2 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
TRAIPQ9BWF2 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRAIPQ9BWF2 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRAIPQ9BWF2 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
TRAIPQ9BWF2 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC17.87■□□□□ 0.45
TRAIPQ9BWF2 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC17.87■□□□□ 0.45
TRAIPQ9BWF2 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRAIPQ9BWF2 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRAIPQ9BWF2 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC17.87■□□□□ 0.45
TRAIPQ9BWF2 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRAIPQ9BWF2 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRAIPQ9BWF2 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRAIPQ9BWF2 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC17.87■□□□□ 0.45
TRAIPQ9BWF2 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRAIPQ9BWF2 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
TRAIPQ9BWF2 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
TRAIPQ9BWF2 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
TRAIPQ9BWF2 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
TRAIPQ9BWF2 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
TRAIPQ9BWF2 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC17.87■□□□□ 0.45
TRAIPQ9BWF2 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
TRAIPQ9BWF2 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC17.87■□□□□ 0.45
TRAIPQ9BWF2 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC17.87■□□□□ 0.45
TRAIPQ9BWF2 HLA-J-202ENST00000469281 1241 ntBASIC17.87■□□□□ 0.45
TRAIPQ9BWF2 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC17.87■□□□□ 0.45
TRAIPQ9BWF2 BANF1P1-201ENST00000553684 263 ntBASIC17.87■□□□□ 0.45
TRAIPQ9BWF2 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC17.87■□□□□ 0.45
TRAIPQ9BWF2 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRAIPQ9BWF2 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC17.87■□□□□ 0.45
TRAIPQ9BWF2 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC17.87■□□□□ 0.45
TRAIPQ9BWF2 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC17.87■□□□□ 0.45
TRAIPQ9BWF2 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC17.87■□□□□ 0.45
TRAIPQ9BWF2 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC17.87■□□□□ 0.45
TRAIPQ9BWF2 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
TRAIPQ9BWF2 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRAIPQ9BWF2 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC17.87■□□□□ 0.45
TRAIPQ9BWF2 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC17.87■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 82.9 ms