Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
NUP88Q99567 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
NUP88Q99567 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC19.11■□□□□ 0.65
NUP88Q99567 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
NUP88Q99567 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
NUP88Q99567 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC19.11■□□□□ 0.65
NUP88Q99567 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
NUP88Q99567 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
NUP88Q99567 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC19.11■□□□□ 0.65
NUP88Q99567 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC19.11■□□□□ 0.65
NUP88Q99567 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
NUP88Q99567 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC19.11■□□□□ 0.65
NUP88Q99567 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
NUP88Q99567 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
NUP88Q99567 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
NUP88Q99567 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
NUP88Q99567 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC19.1■□□□□ 0.65
NUP88Q99567 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC19.1■□□□□ 0.65
NUP88Q99567 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
NUP88Q99567 AC078925.2-201ENST00000624013 1973 ntBASIC19.1■□□□□ 0.65
NUP88Q99567 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
NUP88Q99567 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
NUP88Q99567 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC19.1■□□□□ 0.65
NUP88Q99567 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
NUP88Q99567 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
NUP88Q99567 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
NUP88Q99567 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
NUP88Q99567 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
NUP88Q99567 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
NUP88Q99567 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
NUP88Q99567 TSSK5P-201ENST00000423978 907 ntBASIC19.1■□□□□ 0.65
NUP88Q99567 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC19.1■□□□□ 0.65
NUP88Q99567 COX20P2-201ENST00000452636 358 ntBASIC19.1■□□□□ 0.65
NUP88Q99567 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
NUP88Q99567 AC004890.2-204ENST00000481968 304 ntBASIC19.1■□□□□ 0.65
NUP88Q99567 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC19.1■□□□□ 0.65
NUP88Q99567 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC19.1■□□□□ 0.65
NUP88Q99567 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
NUP88Q99567 FHL2-212ENST00000607522 759 ntTSL 2 BASIC19.1■□□□□ 0.65
NUP88Q99567 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
NUP88Q99567 AL590560.3-201ENST00000623350 461 ntBASIC19.1■□□□□ 0.65
NUP88Q99567 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
NUP88Q99567 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
NUP88Q99567 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
NUP88Q99567 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC19.1■□□□□ 0.65
NUP88Q99567 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
NUP88Q99567 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
NUP88Q99567 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
NUP88Q99567 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
NUP88Q99567 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
NUP88Q99567 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
NUP88Q99567 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
NUP88Q99567 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC19.09■□□□□ 0.65
NUP88Q99567 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC19.09■□□□□ 0.65
NUP88Q99567 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
NUP88Q99567 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
NUP88Q99567 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
NUP88Q99567 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC19.09■□□□□ 0.65
NUP88Q99567 AC018695.7-201ENST00000624587 2492 ntBASIC19.09■□□□□ 0.65
NUP88Q99567 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
NUP88Q99567 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
NUP88Q99567 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
NUP88Q99567 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
NUP88Q99567 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
NUP88Q99567 MRPS18AP1-201ENST00000414458 589 ntBASIC19.09■□□□□ 0.65
NUP88Q99567 AC241585.1-201ENST00000433527 519 ntBASIC19.09■□□□□ 0.65
NUP88Q99567 MTND6P24-201ENST00000440466 518 ntBASIC19.09■□□□□ 0.65
NUP88Q99567 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
NUP88Q99567 AC093724.1-201ENST00000448659 1027 ntBASIC19.09■□□□□ 0.65
NUP88Q99567 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
NUP88Q99567 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
NUP88Q99567 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC19.09■□□□□ 0.65
NUP88Q99567 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC19.09■□□□□ 0.65
NUP88Q99567 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC19.09■□□□□ 0.65
NUP88Q99567 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC19.09■□□□□ 0.65
NUP88Q99567 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC19.09■□□□□ 0.65
NUP88Q99567 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
NUP88Q99567 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
NUP88Q99567 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
NUP88Q99567 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC19.09■□□□□ 0.65
NUP88Q99567 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC19.09■□□□□ 0.65
NUP88Q99567 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
NUP88Q99567 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
NUP88Q99567 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC19.09■□□□□ 0.65
NUP88Q99567 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
NUP88Q99567 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC19.08■□□□□ 0.65
NUP88Q99567 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC19.08■□□□□ 0.65
NUP88Q99567 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
NUP88Q99567 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
NUP88Q99567 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC19.08■□□□□ 0.65
NUP88Q99567 FLJ38576-201ENST00000623820 2459 ntBASIC19.08■□□□□ 0.65
NUP88Q99567 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC19.08■□□□□ 0.65
NUP88Q99567 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
NUP88Q99567 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC19.08■□□□□ 0.65
NUP88Q99567 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.65
NUP88Q99567 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC19.08■□□□□ 0.64
NUP88Q99567 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
NUP88Q99567 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC19.08■□□□□ 0.64
NUP88Q99567 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC19.08■□□□□ 0.64
NUP88Q99567 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC19.08■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms