Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC12.64□□□□□ -0.39
CCDC140Q96MF4 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CCDC140Q96MF4 AL603832.2-201ENST00000566195 2125 ntBASIC12.64□□□□□ -0.39
CCDC140Q96MF4 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CCDC140Q96MF4 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CCDC140Q96MF4 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
CCDC140Q96MF4 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CCDC140Q96MF4 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC12.64□□□□□ -0.39
CCDC140Q96MF4 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
CCDC140Q96MF4 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC12.64□□□□□ -0.39
CCDC140Q96MF4 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
CCDC140Q96MF4 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC12.64□□□□□ -0.39
CCDC140Q96MF4 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC12.64□□□□□ -0.39
CCDC140Q96MF4 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC12.64□□□□□ -0.39
CCDC140Q96MF4 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CCDC140Q96MF4 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CCDC140Q96MF4 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CCDC140Q96MF4 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CCDC140Q96MF4 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
CCDC140Q96MF4 MIR648-201ENST00000385046 94 ntBASIC12.64□□□□□ -0.39
CCDC140Q96MF4 AC142381.1-201ENST00000426099 345 ntBASIC12.64□□□□□ -0.39
CCDC140Q96MF4 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC12.64□□□□□ -0.39
CCDC140Q96MF4 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC12.64□□□□□ -0.39
CCDC140Q96MF4 SPCS2P4-201ENST00000436160 681 ntBASIC12.64□□□□□ -0.39
CCDC140Q96MF4 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC12.64□□□□□ -0.39
CCDC140Q96MF4 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC12.64□□□□□ -0.39
CCDC140Q96MF4 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC12.64□□□□□ -0.39
CCDC140Q96MF4 CEND1P1-201ENST00000451006 455 ntBASIC12.64□□□□□ -0.39
CCDC140Q96MF4 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC12.64□□□□□ -0.39
CCDC140Q96MF4 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC12.64□□□□□ -0.39
CCDC140Q96MF4 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC12.64□□□□□ -0.39
CCDC140Q96MF4 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC12.64□□□□□ -0.39
CCDC140Q96MF4 GATB-205ENST00000508611 605 ntTSL 2 BASIC12.64□□□□□ -0.39
CCDC140Q96MF4 YBX1P5-201ENST00000509441 847 ntBASIC12.64□□□□□ -0.39
CCDC140Q96MF4 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC12.64□□□□□ -0.39
CCDC140Q96MF4 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC12.64□□□□□ -0.39
CCDC140Q96MF4 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
CCDC140Q96MF4 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC12.64□□□□□ -0.39
CCDC140Q96MF4 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC12.64□□□□□ -0.39
CCDC140Q96MF4 MIR4469-201ENST00000583919 79 ntBASIC12.64□□□□□ -0.39
CCDC140Q96MF4 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC12.64□□□□□ -0.39
CCDC140Q96MF4 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC12.64□□□□□ -0.39
CCDC140Q96MF4 NKG7-205ENST00000600427 520 ntTSL 3 BASIC12.64□□□□□ -0.39
CCDC140Q96MF4 AL365330.1-201ENST00000607459 531 ntBASIC12.64□□□□□ -0.39
CCDC140Q96MF4 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC12.64□□□□□ -0.39
CCDC140Q96MF4 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CCDC140Q96MF4 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC12.64□□□□□ -0.39
CCDC140Q96MF4 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
CCDC140Q96MF4 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
CCDC140Q96MF4 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC12.64□□□□□ -0.39
CCDC140Q96MF4 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CCDC140Q96MF4 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC12.64□□□□□ -0.39
CCDC140Q96MF4 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC12.64□□□□□ -0.39
CCDC140Q96MF4 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
CCDC140Q96MF4 GOLGA2P9-201ENST00000596977 1937 ntBASIC12.64□□□□□ -0.39
CCDC140Q96MF4 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CCDC140Q96MF4 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
CCDC140Q96MF4 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC12.64□□□□□ -0.39
CCDC140Q96MF4 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC12.64□□□□□ -0.39
CCDC140Q96MF4 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CCDC140Q96MF4 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
CCDC140Q96MF4 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
CCDC140Q96MF4 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
CCDC140Q96MF4 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
CCDC140Q96MF4 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
CCDC140Q96MF4 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC12.63□□□□□ -0.39
CCDC140Q96MF4 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC12.63□□□□□ -0.39
CCDC140Q96MF4 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CCDC140Q96MF4 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC12.63□□□□□ -0.39
CCDC140Q96MF4 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC12.63□□□□□ -0.39
CCDC140Q96MF4 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
CCDC140Q96MF4 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CCDC140Q96MF4 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CCDC140Q96MF4 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC12.63□□□□□ -0.39
CCDC140Q96MF4 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CCDC140Q96MF4 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
CCDC140Q96MF4 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC12.63□□□□□ -0.39
CCDC140Q96MF4 COA5-202ENST00000409997 557 ntTSL 4 BASIC12.63□□□□□ -0.39
CCDC140Q96MF4 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC12.63□□□□□ -0.39
CCDC140Q96MF4 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC12.63□□□□□ -0.39
CCDC140Q96MF4 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC12.63□□□□□ -0.39
CCDC140Q96MF4 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CCDC140Q96MF4 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC12.63□□□□□ -0.39
CCDC140Q96MF4 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC12.63□□□□□ -0.39
CCDC140Q96MF4 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
CCDC140Q96MF4 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC12.63□□□□□ -0.39
CCDC140Q96MF4 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC12.63□□□□□ -0.39
CCDC140Q96MF4 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
CCDC140Q96MF4 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC12.63□□□□□ -0.39
CCDC140Q96MF4 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CCDC140Q96MF4 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
CCDC140Q96MF4 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC12.63□□□□□ -0.39
CCDC140Q96MF4 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC12.63□□□□□ -0.39
CCDC140Q96MF4 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
CCDC140Q96MF4 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
CCDC140Q96MF4 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CCDC140Q96MF4 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC12.63□□□□□ -0.39
CCDC140Q96MF4 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
CCDC140Q96MF4 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC12.63□□□□□ -0.39
CCDC140Q96MF4 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC12.63□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms