Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CLHC1Q8NHS4 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC15.75■□□□□ 0.11
CLHC1Q8NHS4 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC15.75■□□□□ 0.11
CLHC1Q8NHS4 FAM185BP-201ENST00000443595 716 ntBASIC15.75■□□□□ 0.11
CLHC1Q8NHS4 AC108751.1-201ENST00000490852 363 ntBASIC15.75■□□□□ 0.11
CLHC1Q8NHS4 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC15.75■□□□□ 0.11
CLHC1Q8NHS4 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC15.75■□□□□ 0.11
CLHC1Q8NHS4 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC15.75■□□□□ 0.11
CLHC1Q8NHS4 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
CLHC1Q8NHS4 AC020765.3-201ENST00000613051 740 ntBASIC15.75■□□□□ 0.11
CLHC1Q8NHS4 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CLHC1Q8NHS4 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
CLHC1Q8NHS4 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CLHC1Q8NHS4 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CLHC1Q8NHS4 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CLHC1Q8NHS4 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC15.75■□□□□ 0.11
CLHC1Q8NHS4 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC15.75■□□□□ 0.11
CLHC1Q8NHS4 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC15.75■□□□□ 0.11
CLHC1Q8NHS4 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC15.75■□□□□ 0.11
CLHC1Q8NHS4 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CLHC1Q8NHS4 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC15.75■□□□□ 0.11
CLHC1Q8NHS4 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC15.74■□□□□ 0.11
CLHC1Q8NHS4 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
CLHC1Q8NHS4 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CLHC1Q8NHS4 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CLHC1Q8NHS4 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
CLHC1Q8NHS4 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
CLHC1Q8NHS4 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
CLHC1Q8NHS4 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CLHC1Q8NHS4 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
CLHC1Q8NHS4 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC15.74■□□□□ 0.11
CLHC1Q8NHS4 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CLHC1Q8NHS4 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CLHC1Q8NHS4 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CLHC1Q8NHS4 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
CLHC1Q8NHS4 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CLHC1Q8NHS4 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC15.74■□□□□ 0.11
CLHC1Q8NHS4 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CLHC1Q8NHS4 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC15.74■□□□□ 0.11
CLHC1Q8NHS4 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
CLHC1Q8NHS4 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
CLHC1Q8NHS4 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC15.74■□□□□ 0.11
CLHC1Q8NHS4 MTRF1LP2-201ENST00000506027 1122 ntBASIC15.74■□□□□ 0.11
CLHC1Q8NHS4 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC15.74■□□□□ 0.11
CLHC1Q8NHS4 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC15.74■□□□□ 0.11
CLHC1Q8NHS4 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC15.74■□□□□ 0.11
CLHC1Q8NHS4 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
CLHC1Q8NHS4 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC15.74■□□□□ 0.11
CLHC1Q8NHS4 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CLHC1Q8NHS4 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CLHC1Q8NHS4 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CLHC1Q8NHS4 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CLHC1Q8NHS4 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CLHC1Q8NHS4 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
CLHC1Q8NHS4 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC15.74■□□□□ 0.11
CLHC1Q8NHS4 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC15.74■□□□□ 0.11
CLHC1Q8NHS4 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC15.74■□□□□ 0.11
CLHC1Q8NHS4 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CLHC1Q8NHS4 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CLHC1Q8NHS4 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CLHC1Q8NHS4 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC15.74■□□□□ 0.11
CLHC1Q8NHS4 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CLHC1Q8NHS4 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CLHC1Q8NHS4 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC15.73■□□□□ 0.11
CLHC1Q8NHS4 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC15.73■□□□□ 0.11
CLHC1Q8NHS4 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC15.73■□□□□ 0.11
CLHC1Q8NHS4 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CLHC1Q8NHS4 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CLHC1Q8NHS4 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CLHC1Q8NHS4 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC15.73■□□□□ 0.11
CLHC1Q8NHS4 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CLHC1Q8NHS4 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
CLHC1Q8NHS4 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
CLHC1Q8NHS4 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
CLHC1Q8NHS4 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC15.73■□□□□ 0.11
CLHC1Q8NHS4 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CLHC1Q8NHS4 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CLHC1Q8NHS4 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CLHC1Q8NHS4 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC15.73■□□□□ 0.11
CLHC1Q8NHS4 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC15.73■□□□□ 0.11
CLHC1Q8NHS4 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
CLHC1Q8NHS4 CSF3-203ENST00000394148 622 ntTSL 3 BASIC15.73■□□□□ 0.11
CLHC1Q8NHS4 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC15.73■□□□□ 0.11
CLHC1Q8NHS4 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CLHC1Q8NHS4 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CLHC1Q8NHS4 HMGA1P7-201ENST00000406908 502 ntBASIC15.73■□□□□ 0.11
CLHC1Q8NHS4 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CLHC1Q8NHS4 AC098831.1-202ENST00000438821 336 ntBASIC15.73■□□□□ 0.11
CLHC1Q8NHS4 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
CLHC1Q8NHS4 CXCL1P1-201ENST00000502804 216 ntBASIC15.73■□□□□ 0.11
CLHC1Q8NHS4 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
CLHC1Q8NHS4 MIR4515-201ENST00000584082 81 ntBASIC15.73■□□□□ 0.11
CLHC1Q8NHS4 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC15.73■□□□□ 0.11
CLHC1Q8NHS4 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
CLHC1Q8NHS4 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CLHC1Q8NHS4 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CLHC1Q8NHS4 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC15.73■□□□□ 0.11
CLHC1Q8NHS4 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
CLHC1Q8NHS4 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
CLHC1Q8NHS4 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 56.3 ms