Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
RNF4P78317 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
RNF4P78317 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC15.13■□□□□ 0.01
RNF4P78317 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC15.13■□□□□ 0.01
RNF4P78317 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
RNF4P78317 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC15.13■□□□□ 0.01
RNF4P78317 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC15.13■□□□□ 0.01
RNF4P78317 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
RNF4P78317 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC15.13■□□□□ 0.01
RNF4P78317 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
RNF4P78317 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
RNF4P78317 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
RNF4P78317 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
RNF4P78317 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
RNF4P78317 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
RNF4P78317 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC15.13■□□□□ 0.01
RNF4P78317 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC15.13■□□□□ 0.01
RNF4P78317 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RNF4P78317 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
RNF4P78317 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
RNF4P78317 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
RNF4P78317 ANKRD26P3-201ENST00000454044 2748 ntBASIC15.12■□□□□ 0.01
RNF4P78317 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
RNF4P78317 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC15.12■□□□□ 0.01
RNF4P78317 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC15.12■□□□□ 0.01
RNF4P78317 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
RNF4P78317 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC15.12■□□□□ 0.01
RNF4P78317 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
RNF4P78317 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RNF4P78317 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
RNF4P78317 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RNF4P78317 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
RNF4P78317 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC15.12■□□□□ 0.01
RNF4P78317 AC067863.1-201ENST00000494933 530 ntBASIC15.12■□□□□ 0.01
RNF4P78317 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC15.12■□□□□ 0.01
RNF4P78317 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC15.12■□□□□ 0.01
RNF4P78317 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RNF4P78317 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC15.12■□□□□ 0.01
RNF4P78317 AC106028.4-201ENST00000614509 607 ntBASIC15.12■□□□□ 0.01
RNF4P78317 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
RNF4P78317 C8orf49-201ENST00000525043 1968 ntBASIC15.12■□□□□ 0.01
RNF4P78317 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC15.12■□□□□ 0.01
RNF4P78317 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
RNF4P78317 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
RNF4P78317 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RNF4P78317 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RNF4P78317 TUBB3P1-201ENST00000405796 1332 ntBASIC15.12■□□□□ 0.01
RNF4P78317 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
RNF4P78317 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
RNF4P78317 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC15.12■□□□□ 0.01
RNF4P78317 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC15.12■□□□□ 0.01
RNF4P78317 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RNF4P78317 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
RNF4P78317 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC15.12■□□□□ 0.01
RNF4P78317 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
RNF4P78317 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC15.11■□□□□ 0.01
RNF4P78317 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RNF4P78317 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
RNF4P78317 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC15.11■□□□□ 0.01
RNF4P78317 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
RNF4P78317 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
RNF4P78317 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC15.11■□□□□ 0.01
RNF4P78317 F11R-206ENST00000621309 4770 ntTSL 5 BASIC15.11■□□□□ 0.01
RNF4P78317 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC15.11■□□□□ 0.01
RNF4P78317 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RNF4P78317 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC15.11■□□□□ 0.01
RNF4P78317 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RNF4P78317 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RNF4P78317 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
RNF4P78317 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RNF4P78317 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
RNF4P78317 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
RNF4P78317 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC15.11■□□□□ 0.01
RNF4P78317 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC15.11■□□□□ 0.01
RNF4P78317 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC15.11■□□□□ 0.01
RNF4P78317 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC15.11■□□□□ 0.01
RNF4P78317 MIR4453-201ENST00000584019 89 ntBASIC15.11■□□□□ 0.01
RNF4P78317 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC15.11■□□□□ 0.01
RNF4P78317 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC15.11■□□□□ 0.01
RNF4P78317 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC15.11■□□□□ 0.01
RNF4P78317 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC15.11■□□□□ 0.01
RNF4P78317 AC003101.2-201ENST00000612557 442 ntBASIC15.11■□□□□ 0.01
RNF4P78317 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC15.11■□□□□ 0.01
RNF4P78317 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
RNF4P78317 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC15.11■□□□□ 0.01
RNF4P78317 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC15.11■□□□□ 0.01
RNF4P78317 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
RNF4P78317 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RNF4P78317 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
RNF4P78317 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RNF4P78317 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RNF4P78317 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
RNF4P78317 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RNF4P78317 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC15.11■□□□□ 0.01
RNF4P78317 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC15.11■□□□□ 0.01
RNF4P78317 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
RNF4P78317 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC15.11■□□□□ 0.01
RNF4P78317 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
RNF4P78317 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RNF4P78317 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms