Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
FOXA1P55317 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
FOXA1P55317 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
FOXA1P55317 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
FOXA1P55317 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC15.83■□□□□ 0.13
FOXA1P55317 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
FOXA1P55317 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC15.83■□□□□ 0.12
FOXA1P55317 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
FOXA1P55317 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
FOXA1P55317 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
FOXA1P55317 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC15.83■□□□□ 0.12
FOXA1P55317 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
FOXA1P55317 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
FOXA1P55317 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
FOXA1P55317 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
FOXA1P55317 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC15.83■□□□□ 0.12
FOXA1P55317 MRPL3P1-201ENST00000400109 1033 ntBASIC15.83■□□□□ 0.12
FOXA1P55317 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC15.83■□□□□ 0.12
FOXA1P55317 ATP6V0CP3-201ENST00000417255 467 ntBASIC15.83■□□□□ 0.12
FOXA1P55317 AC093724.1-201ENST00000448659 1027 ntBASIC15.83■□□□□ 0.12
FOXA1P55317 HCG4B-203ENST00000450128 991 ntBASIC15.83■□□□□ 0.12
FOXA1P55317 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.12
FOXA1P55317 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC15.83■□□□□ 0.12
FOXA1P55317 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC15.83■□□□□ 0.12
FOXA1P55317 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC15.83■□□□□ 0.12
FOXA1P55317 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC15.83■□□□□ 0.12
FOXA1P55317 AC010507.1-201ENST00000633895 436 ntBASIC15.83■□□□□ 0.12
FOXA1P55317 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC15.83■□□□□ 0.12
FOXA1P55317 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
FOXA1P55317 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC15.83■□□□□ 0.12
FOXA1P55317 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC15.83■□□□□ 0.12
FOXA1P55317 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
FOXA1P55317 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
FOXA1P55317 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
FOXA1P55317 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC15.83■□□□□ 0.12
FOXA1P55317 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC15.83■□□□□ 0.12
FOXA1P55317 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
FOXA1P55317 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC15.83■□□□□ 0.12
FOXA1P55317 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
FOXA1P55317 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
FOXA1P55317 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
FOXA1P55317 TSPY26P-202ENST00000565928 3884 ntBASIC15.83■□□□□ 0.12
FOXA1P55317 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
FOXA1P55317 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
FOXA1P55317 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
FOXA1P55317 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC15.83■□□□□ 0.12
FOXA1P55317 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC15.83■□□□□ 0.12
FOXA1P55317 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC15.83■□□□□ 0.12
FOXA1P55317 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
FOXA1P55317 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC15.82■□□□□ 0.12
FOXA1P55317 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
FOXA1P55317 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
FOXA1P55317 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
FOXA1P55317 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
FOXA1P55317 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
FOXA1P55317 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
FOXA1P55317 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
FOXA1P55317 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
FOXA1P55317 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
FOXA1P55317 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
FOXA1P55317 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC15.82■□□□□ 0.12
FOXA1P55317 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC15.82■□□□□ 0.12
FOXA1P55317 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
FOXA1P55317 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC15.82■□□□□ 0.12
FOXA1P55317 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
FOXA1P55317 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
FOXA1P55317 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
FOXA1P55317 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC15.82■□□□□ 0.12
FOXA1P55317 TCAP-202ENST00000578283 583 ntTSL 5 BASIC15.82■□□□□ 0.12
FOXA1P55317 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC15.82■□□□□ 0.12
FOXA1P55317 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
FOXA1P55317 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC15.82■□□□□ 0.12
FOXA1P55317 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC15.82■□□□□ 0.12
FOXA1P55317 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC15.82■□□□□ 0.12
FOXA1P55317 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC15.82■□□□□ 0.12
FOXA1P55317 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
FOXA1P55317 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
FOXA1P55317 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC15.82■□□□□ 0.12
FOXA1P55317 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
FOXA1P55317 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
FOXA1P55317 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
FOXA1P55317 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC15.82■□□□□ 0.12
FOXA1P55317 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
FOXA1P55317 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
FOXA1P55317 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC15.82■□□□□ 0.12
FOXA1P55317 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
FOXA1P55317 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC15.82■□□□□ 0.12
FOXA1P55317 PPT1-215ENST00000641471 2368 ntBASIC15.82■□□□□ 0.12
FOXA1P55317 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC15.82■□□□□ 0.12
FOXA1P55317 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
FOXA1P55317 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
FOXA1P55317 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC15.81■□□□□ 0.12
FOXA1P55317 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
FOXA1P55317 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
FOXA1P55317 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
FOXA1P55317 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
FOXA1P55317 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
FOXA1P55317 AC004870.1-201ENST00000315132 882 ntBASIC15.81■□□□□ 0.12
FOXA1P55317 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
FOXA1P55317 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms