Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC20■□□□□ 0.79
NUP98P52948 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC20■□□□□ 0.79
NUP98P52948 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
NUP98P52948 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
NUP98P52948 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC20■□□□□ 0.79
NUP98P52948 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC20■□□□□ 0.79
NUP98P52948 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
NUP98P52948 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
NUP98P52948 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC20■□□□□ 0.79
NUP98P52948 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
NUP98P52948 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
NUP98P52948 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
NUP98P52948 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC20■□□□□ 0.79
NUP98P52948 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
NUP98P52948 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC19.99■□□□□ 0.79
NUP98P52948 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
NUP98P52948 AC005229.1-201ENST00000392885 409 ntBASIC19.99■□□□□ 0.79
NUP98P52948 SOCS2P1-201ENST00000417727 557 ntBASIC19.99■□□□□ 0.79
NUP98P52948 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC19.99■□□□□ 0.79
NUP98P52948 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC19.99■□□□□ 0.79
NUP98P52948 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC19.99■□□□□ 0.79
NUP98P52948 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC19.99■□□□□ 0.79
NUP98P52948 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC19.99■□□□□ 0.79
NUP98P52948 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
NUP98P52948 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC19.99■□□□□ 0.79
NUP98P52948 AC133539.2-201ENST00000604757 467 ntBASIC19.99■□□□□ 0.79
NUP98P52948 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC19.99■□□□□ 0.79
NUP98P52948 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC19.99■□□□□ 0.79
NUP98P52948 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
NUP98P52948 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
NUP98P52948 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
NUP98P52948 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
NUP98P52948 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
NUP98P52948 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
NUP98P52948 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
NUP98P52948 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
NUP98P52948 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
NUP98P52948 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC19.99■□□□□ 0.79
NUP98P52948 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC19.99■□□□□ 0.79
NUP98P52948 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
NUP98P52948 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
NUP98P52948 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
NUP98P52948 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
NUP98P52948 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
NUP98P52948 APOA1-205ENST00000375329 927 ntTSL 2 BASIC19.99■□□□□ 0.79
NUP98P52948 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC19.99■□□□□ 0.79
NUP98P52948 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC19.99■□□□□ 0.79
NUP98P52948 PIGL-212ENST00000581006 554 ntTSL 4 BASIC19.99■□□□□ 0.79
NUP98P52948 AC097359.3-201ENST00000603982 1210 ntBASIC19.99■□□□□ 0.79
NUP98P52948 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
NUP98P52948 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
NUP98P52948 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC19.99■□□□□ 0.79
NUP98P52948 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
NUP98P52948 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
NUP98P52948 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC19.98■□□□□ 0.79
NUP98P52948 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
NUP98P52948 AC022211.2-201ENST00000585075 2527 ntBASIC19.98■□□□□ 0.79
NUP98P52948 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
NUP98P52948 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
NUP98P52948 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
NUP98P52948 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC19.98■□□□□ 0.79
NUP98P52948 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC19.98■□□□□ 0.79
NUP98P52948 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC19.98■□□□□ 0.79
NUP98P52948 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC19.98■□□□□ 0.79
NUP98P52948 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
NUP98P52948 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC19.98■□□□□ 0.79
NUP98P52948 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC19.98■□□□□ 0.79
NUP98P52948 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC19.98■□□□□ 0.79
NUP98P52948 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
NUP98P52948 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
NUP98P52948 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
NUP98P52948 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
NUP98P52948 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
NUP98P52948 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
NUP98P52948 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
NUP98P52948 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC19.97■□□□□ 0.79
NUP98P52948 RPL28-204ENST00000431533 590 ntTSL 2 BASIC19.97■□□□□ 0.79
NUP98P52948 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC19.97■□□□□ 0.79
NUP98P52948 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC19.97■□□□□ 0.79
NUP98P52948 RPL28-206ENST00000558752 671 ntTSL 3 BASIC19.97■□□□□ 0.79
NUP98P52948 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
NUP98P52948 AC107373.2-201ENST00000607735 490 ntBASIC19.97■□□□□ 0.79
NUP98P52948 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
NUP98P52948 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
NUP98P52948 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
NUP98P52948 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC19.97■□□□□ 0.79
NUP98P52948 LRRFIP1P1-201ENST00000498774 2246 ntBASIC19.97■□□□□ 0.79
NUP98P52948 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
NUP98P52948 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
NUP98P52948 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC19.97■□□□□ 0.79
NUP98P52948 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
NUP98P52948 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC19.97■□□□□ 0.79
NUP98P52948 AL121723.1-201ENST00000445194 1519 ntBASIC19.97■□□□□ 0.79
NUP98P52948 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC19.97■□□□□ 0.79
NUP98P52948 AC011676.5-201ENST00000624864 2660 ntBASIC19.97■□□□□ 0.79
NUP98P52948 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
NUP98P52948 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
NUP98P52948 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
NUP98P52948 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
NUP98P52948 RPL28-203ENST00000428193 573 ntTSL 2 BASIC19.97■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms