Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
HOXD4P09016 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HOXD4P09016 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
HOXD4P09016 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
HOXD4P09016 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC14.87□□□□□ -0.03
HOXD4P09016 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC14.87□□□□□ -0.03
HOXD4P09016 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
HOXD4P09016 OS9-205ENST00000413095 1660 ntTSL 2 BASIC14.87□□□□□ -0.03
HOXD4P09016 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HOXD4P09016 TSPY26P-202ENST00000565928 3884 ntBASIC14.87□□□□□ -0.03
HOXD4P09016 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HOXD4P09016 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HOXD4P09016 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HOXD4P09016 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC14.87□□□□□ -0.03
HOXD4P09016 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
HOXD4P09016 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HOXD4P09016 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC14.87□□□□□ -0.03
HOXD4P09016 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HOXD4P09016 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HOXD4P09016 KLK8-202ENST00000320838 456 ntTSL 5 BASIC14.87□□□□□ -0.03
HOXD4P09016 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HOXD4P09016 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC14.87□□□□□ -0.03
HOXD4P09016 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
HOXD4P09016 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
HOXD4P09016 BAD-202ENST00000394531 631 ntTSL 3 BASIC14.87□□□□□ -0.03
HOXD4P09016 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC14.87□□□□□ -0.03
HOXD4P09016 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC14.87□□□□□ -0.03
HOXD4P09016 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC14.87□□□□□ -0.03
HOXD4P09016 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC14.87□□□□□ -0.03
HOXD4P09016 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC14.87□□□□□ -0.03
HOXD4P09016 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC14.87□□□□□ -0.03
HOXD4P09016 BAD-207ENST00000544785 525 ntTSL 3 BASIC14.87□□□□□ -0.03
HOXD4P09016 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC14.87□□□□□ -0.03
HOXD4P09016 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC14.87□□□□□ -0.03
HOXD4P09016 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC14.87□□□□□ -0.03
HOXD4P09016 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC14.87□□□□□ -0.03
HOXD4P09016 NKG7-205ENST00000600427 520 ntTSL 3 BASIC14.87□□□□□ -0.03
HOXD4P09016 AC013467.2-201ENST00000605472 835 ntBASIC14.87□□□□□ -0.03
HOXD4P09016 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC14.87□□□□□ -0.03
HOXD4P09016 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
HOXD4P09016 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
HOXD4P09016 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HOXD4P09016 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HOXD4P09016 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HOXD4P09016 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC14.87□□□□□ -0.03
HOXD4P09016 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC14.87□□□□□ -0.03
HOXD4P09016 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HOXD4P09016 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
HOXD4P09016 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HOXD4P09016 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
HOXD4P09016 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HOXD4P09016 AC016027.1-202ENST00000607927 1699 ntBASIC14.87□□□□□ -0.03
HOXD4P09016 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HOXD4P09016 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC14.86□□□□□ -0.03
HOXD4P09016 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HOXD4P09016 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HOXD4P09016 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HOXD4P09016 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HOXD4P09016 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HOXD4P09016 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HOXD4P09016 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
HOXD4P09016 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
HOXD4P09016 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
HOXD4P09016 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HOXD4P09016 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC14.86□□□□□ -0.03
HOXD4P09016 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC14.86□□□□□ -0.03
HOXD4P09016 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC14.86□□□□□ -0.03
HOXD4P09016 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
HOXD4P09016 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
HOXD4P09016 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
HOXD4P09016 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
HOXD4P09016 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HOXD4P09016 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
HOXD4P09016 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HOXD4P09016 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC14.86□□□□□ -0.03
HOXD4P09016 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC14.86□□□□□ -0.03
HOXD4P09016 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HOXD4P09016 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC14.86□□□□□ -0.03
HOXD4P09016 AC125807.1-201ENST00000483097 614 ntBASIC14.86□□□□□ -0.03
HOXD4P09016 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC14.86□□□□□ -0.03
HOXD4P09016 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HOXD4P09016 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC14.86□□□□□ -0.03
HOXD4P09016 AP002490.2-201ENST00000524791 560 ntBASIC14.86□□□□□ -0.03
HOXD4P09016 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HOXD4P09016 SLC25A39P2-201ENST00000537614 270 ntBASIC14.86□□□□□ -0.03
HOXD4P09016 AC073389.1-201ENST00000595595 795 ntBASIC14.86□□□□□ -0.03
HOXD4P09016 SIGLEC29P-201ENST00000599873 1114 ntBASIC14.86□□□□□ -0.03
HOXD4P09016 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC14.86□□□□□ -0.03
HOXD4P09016 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC14.86□□□□□ -0.03
HOXD4P09016 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC14.86□□□□□ -0.03
HOXD4P09016 AF228730.6-201ENST00000641497 218 ntBASIC14.86□□□□□ -0.03
HOXD4P09016 AC084121.3-201ENST00000641716 218 ntBASIC14.86□□□□□ -0.03
HOXD4P09016 AC105233.6-201ENST00000642093 218 ntBASIC14.86□□□□□ -0.03
HOXD4P09016 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC14.86□□□□□ -0.03
HOXD4P09016 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HOXD4P09016 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC14.86□□□□□ -0.03
HOXD4P09016 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
HOXD4P09016 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HOXD4P09016 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC14.86□□□□□ -0.03
HOXD4P09016 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC14.86□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms