Protein–RNA interactions for Protein: P06753

TPM3, Tropomyosin alpha-3 chain, humanhuman

Predictions only

Length 285 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3P06753 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TPM3P06753 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC18.41■□□□□ 0.54
TPM3P06753 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
TPM3P06753 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
TPM3P06753 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TPM3P06753 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TPM3P06753 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TPM3P06753 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC18.4■□□□□ 0.54
TPM3P06753 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TPM3P06753 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
TPM3P06753 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TPM3P06753 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
TPM3P06753 AL031731.1-201ENST00000642131 2094 ntBASIC18.4■□□□□ 0.54
TPM3P06753 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC18.4■□□□□ 0.54
TPM3P06753 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
TPM3P06753 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC18.4■□□□□ 0.54
TPM3P06753 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TPM3P06753 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
TPM3P06753 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
TPM3P06753 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TPM3P06753 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC18.4■□□□□ 0.54
TPM3P06753 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
TPM3P06753 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TPM3P06753 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC18.4■□□□□ 0.54
TPM3P06753 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC18.4■□□□□ 0.54
TPM3P06753 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
TPM3P06753 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC18.4■□□□□ 0.54
TPM3P06753 POM121L3P-201ENST00000419331 1163 ntBASIC18.4■□□□□ 0.54
TPM3P06753 DRAXINP1-201ENST00000437611 948 ntBASIC18.4■□□□□ 0.54
TPM3P06753 THAP5-204ENST00000438865 868 ntTSL 2 BASIC18.4■□□□□ 0.54
TPM3P06753 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC18.4■□□□□ 0.54
TPM3P06753 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
TPM3P06753 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC18.4■□□□□ 0.54
TPM3P06753 DKFZP434H168-201ENST00000567381 1905 ntBASIC18.4■□□□□ 0.54
TPM3P06753 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TPM3P06753 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
TPM3P06753 AC079776.2-201ENST00000641154 1609 ntBASIC18.4■□□□□ 0.54
TPM3P06753 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TPM3P06753 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC18.4■□□□□ 0.54
TPM3P06753 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
TPM3P06753 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TPM3P06753 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC18.4■□□□□ 0.54
TPM3P06753 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TPM3P06753 KRT8P39-201ENST00000396270 1433 ntBASIC18.4■□□□□ 0.54
TPM3P06753 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
TPM3P06753 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC18.4■□□□□ 0.54
TPM3P06753 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC18.4■□□□□ 0.54
TPM3P06753 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
TPM3P06753 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC18.39■□□□□ 0.54
TPM3P06753 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
TPM3P06753 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
TPM3P06753 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC18.39■□□□□ 0.54
TPM3P06753 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.54
TPM3P06753 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TPM3P06753 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC18.39■□□□□ 0.53
TPM3P06753 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TPM3P06753 PRAL-201ENST00000624952 3286 ntBASIC18.39■□□□□ 0.53
TPM3P06753 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
TPM3P06753 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC18.39■□□□□ 0.53
TPM3P06753 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC18.39■□□□□ 0.53
TPM3P06753 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TPM3P06753 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
TPM3P06753 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TPM3P06753 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TPM3P06753 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC18.39■□□□□ 0.53
TPM3P06753 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TPM3P06753 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
TPM3P06753 AL353135.1-201ENST00000606729 504 ntBASIC18.39■□□□□ 0.53
TPM3P06753 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC18.39■□□□□ 0.53
TPM3P06753 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC18.39■□□□□ 0.53
TPM3P06753 AL512652.2-201ENST00000625156 1716 ntBASIC18.39■□□□□ 0.53
TPM3P06753 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC18.39■□□□□ 0.53
TPM3P06753 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TPM3P06753 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
TPM3P06753 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TPM3P06753 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TPM3P06753 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TPM3P06753 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TPM3P06753 AC016734.2-201ENST00000624325 1377 ntBASIC18.39■□□□□ 0.53
TPM3P06753 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TPM3P06753 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TPM3P06753 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC18.39■□□□□ 0.53
TPM3P06753 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TPM3P06753 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC18.39■□□□□ 0.53
TPM3P06753 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
TPM3P06753 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC18.39■□□□□ 0.53
TPM3P06753 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC18.39■□□□□ 0.53
TPM3P06753 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TPM3P06753 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
TPM3P06753 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TPM3P06753 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
TPM3P06753 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TPM3P06753 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
TPM3P06753 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
TPM3P06753 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
TPM3P06753 AC138035.3-201ENST00000622706 2791 ntBASIC18.38■□□□□ 0.53
TPM3P06753 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC18.38■□□□□ 0.53
TPM3P06753 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
TPM3P06753 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC18.38■□□□□ 0.53
TPM3P06753 LINC01144-201ENST00000626198 1710 ntBASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms