Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC18.27■□□□□ 0.52
MSH4O15457 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
MSH4O15457 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
MSH4O15457 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
MSH4O15457 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC18.27■□□□□ 0.52
MSH4O15457 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
MSH4O15457 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
MSH4O15457 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC18.27■□□□□ 0.52
MSH4O15457 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
MSH4O15457 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
MSH4O15457 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC18.27■□□□□ 0.52
MSH4O15457 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC18.27■□□□□ 0.52
MSH4O15457 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
MSH4O15457 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
MSH4O15457 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC18.27■□□□□ 0.52
MSH4O15457 CENPM-205ENST00000404067 905 ntTSL 3 BASIC18.27■□□□□ 0.52
MSH4O15457 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
MSH4O15457 AC245100.5-201ENST00000452108 331 ntBASIC18.27■□□□□ 0.52
MSH4O15457 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC18.27■□□□□ 0.52
MSH4O15457 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC18.27■□□□□ 0.52
MSH4O15457 DUT-210ENST00000559935 569 ntTSL 3 BASIC18.27■□□□□ 0.52
MSH4O15457 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC18.27■□□□□ 0.52
MSH4O15457 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC18.27■□□□□ 0.52
MSH4O15457 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC18.27■□□□□ 0.52
MSH4O15457 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
MSH4O15457 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
MSH4O15457 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC18.27■□□□□ 0.52
MSH4O15457 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
MSH4O15457 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
MSH4O15457 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC18.27■□□□□ 0.52
MSH4O15457 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
MSH4O15457 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
MSH4O15457 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC18.27■□□□□ 0.52
MSH4O15457 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC18.27■□□□□ 0.51
MSH4O15457 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
MSH4O15457 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
MSH4O15457 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
MSH4O15457 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC18.27■□□□□ 0.51
MSH4O15457 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
MSH4O15457 PKD1P1-201ENST00000458669 6805 ntBASIC18.26■□□□□ 0.51
MSH4O15457 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
MSH4O15457 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
MSH4O15457 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
MSH4O15457 AL596087.1-201ENST00000400979 1969 ntBASIC18.26■□□□□ 0.51
MSH4O15457 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC18.26■□□□□ 0.51
MSH4O15457 MTHFR-217ENST00000641820 1569 ntBASIC18.26■□□□□ 0.51
MSH4O15457 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
MSH4O15457 GRAMD4P3-201ENST00000621665 1669 ntBASIC18.26■□□□□ 0.51
MSH4O15457 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
MSH4O15457 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
MSH4O15457 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
MSH4O15457 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
MSH4O15457 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
MSH4O15457 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
MSH4O15457 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
MSH4O15457 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC18.26■□□□□ 0.51
MSH4O15457 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
MSH4O15457 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC18.26■□□□□ 0.51
MSH4O15457 AL139010.1-201ENST00000454878 894 ntBASIC18.26■□□□□ 0.51
MSH4O15457 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC18.26■□□□□ 0.51
MSH4O15457 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
MSH4O15457 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC18.26■□□□□ 0.51
MSH4O15457 AC073592.8-201ENST00000624126 511 ntBASIC18.26■□□□□ 0.51
MSH4O15457 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC18.26■□□□□ 0.51
MSH4O15457 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC18.26■□□□□ 0.51
MSH4O15457 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
MSH4O15457 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC18.26■□□□□ 0.51
MSH4O15457 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC18.26■□□□□ 0.51
MSH4O15457 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
MSH4O15457 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
MSH4O15457 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC18.25■□□□□ 0.51
MSH4O15457 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
MSH4O15457 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
MSH4O15457 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
MSH4O15457 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
MSH4O15457 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
MSH4O15457 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
MSH4O15457 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC18.25■□□□□ 0.51
MSH4O15457 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC18.25■□□□□ 0.51
MSH4O15457 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
MSH4O15457 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
MSH4O15457 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
MSH4O15457 RPL37AP1-201ENST00000412502 279 ntBASIC18.25■□□□□ 0.51
MSH4O15457 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC18.25■□□□□ 0.51
MSH4O15457 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC18.25■□□□□ 0.51
MSH4O15457 HLA-V-204ENST00000476601 1289 ntBASIC18.25■□□□□ 0.51
MSH4O15457 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC18.25■□□□□ 0.51
MSH4O15457 AC027369.6-201ENST00000525520 931 ntBASIC18.25■□□□□ 0.51
MSH4O15457 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC18.25■□□□□ 0.51
MSH4O15457 AL079307.3-201ENST00000556114 283 ntBASIC18.25■□□□□ 0.51
MSH4O15457 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
MSH4O15457 COQ9-214ENST00000567933 882 ntTSL 3 BASIC18.25■□□□□ 0.51
MSH4O15457 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC18.25■□□□□ 0.51
MSH4O15457 AC026979.3-201ENST00000607315 403 ntBASIC18.25■□□□□ 0.51
MSH4O15457 AL589739.1-201ENST00000607720 493 ntBASIC18.25■□□□□ 0.51
MSH4O15457 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC18.25■□□□□ 0.51
MSH4O15457 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
MSH4O15457 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
MSH4O15457 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
MSH4O15457 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC18.25■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms