Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM38O00635 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM38O00635 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM38O00635 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM38O00635 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM38O00635 AC105917.1-201ENST00000506637 2539 ntBASIC16.5■□□□□ 0.23
TRIM38O00635 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC16.5■□□□□ 0.23
TRIM38O00635 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
TRIM38O00635 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
TRIM38O00635 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
TRIM38O00635 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
TRIM38O00635 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC16.5■□□□□ 0.23
TRIM38O00635 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC16.5■□□□□ 0.23
TRIM38O00635 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC16.5■□□□□ 0.23
TRIM38O00635 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM38O00635 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC16.49■□□□□ 0.23
TRIM38O00635 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM38O00635 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC16.49■□□□□ 0.23
TRIM38O00635 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC16.49■□□□□ 0.23
TRIM38O00635 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM38O00635 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC16.49■□□□□ 0.23
TRIM38O00635 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM38O00635 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM38O00635 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC16.49■□□□□ 0.23
TRIM38O00635 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM38O00635 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM38O00635 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM38O00635 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC16.49■□□□□ 0.23
TRIM38O00635 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM38O00635 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM38O00635 RPL30-202ENST00000396070 440 ntTSL 2 BASIC16.49■□□□□ 0.23
TRIM38O00635 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
TRIM38O00635 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
TRIM38O00635 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC16.49■□□□□ 0.23
TRIM38O00635 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC16.49■□□□□ 0.23
TRIM38O00635 AL512356.2-201ENST00000546955 174 ntBASIC16.49■□□□□ 0.23
TRIM38O00635 AQP6-203ENST00000551733 849 ntTSL 3 BASIC16.49■□□□□ 0.23
TRIM38O00635 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
TRIM38O00635 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM38O00635 AP001059.3-201ENST00000619053 235 ntBASIC16.49■□□□□ 0.23
TRIM38O00635 AL161645.1-201ENST00000622716 1255 ntBASIC16.49■□□□□ 0.23
TRIM38O00635 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC16.49■□□□□ 0.23
TRIM38O00635 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
TRIM38O00635 AC012569.1-201ENST00000591191 1524 ntBASIC16.49■□□□□ 0.23
TRIM38O00635 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC16.49■□□□□ 0.23
TRIM38O00635 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM38O00635 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM38O00635 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM38O00635 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC16.48■□□□□ 0.23
TRIM38O00635 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM38O00635 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM38O00635 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM38O00635 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM38O00635 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC16.48■□□□□ 0.23
TRIM38O00635 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC16.48■□□□□ 0.23
TRIM38O00635 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM38O00635 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM38O00635 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM38O00635 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM38O00635 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM38O00635 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM38O00635 LINC00554-201ENST00000564841 3011 ntBASIC16.48■□□□□ 0.23
TRIM38O00635 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM38O00635 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC16.48■□□□□ 0.23
TRIM38O00635 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM38O00635 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC16.48■□□□□ 0.23
TRIM38O00635 AC055876.3-201ENST00000431496 288 ntBASIC16.48■□□□□ 0.23
TRIM38O00635 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC16.48■□□□□ 0.23
TRIM38O00635 RBPMS2P1-201ENST00000437762 623 ntBASIC16.48■□□□□ 0.23
TRIM38O00635 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC16.48■□□□□ 0.23
TRIM38O00635 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC16.48■□□□□ 0.23
TRIM38O00635 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM38O00635 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM38O00635 LINC01225-203ENST00000563550 1244 ntBASIC16.48■□□□□ 0.23
TRIM38O00635 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC16.48■□□□□ 0.23
TRIM38O00635 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC16.48■□□□□ 0.23
TRIM38O00635 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM38O00635 AL009183.1-201ENST00000603760 355 ntBASIC16.48■□□□□ 0.23
TRIM38O00635 AC138649.4-201ENST00000612222 287 ntBASIC16.48■□□□□ 0.23
TRIM38O00635 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC16.48■□□□□ 0.23
TRIM38O00635 AJ011932.1-201ENST00000621707 465 ntBASIC16.48■□□□□ 0.23
TRIM38O00635 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC16.48■□□□□ 0.23
TRIM38O00635 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM38O00635 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM38O00635 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
TRIM38O00635 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM38O00635 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM38O00635 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC16.48■□□□□ 0.23
TRIM38O00635 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM38O00635 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC16.48■□□□□ 0.23
TRIM38O00635 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM38O00635 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM38O00635 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM38O00635 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC16.48■□□□□ 0.23
TRIM38O00635 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRIM38O00635 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TRIM38O00635 TUBB3P1-201ENST00000405796 1332 ntBASIC16.47■□□□□ 0.23
TRIM38O00635 BSG-215ENST00000618006 1329 ntTSL 2 BASIC16.47■□□□□ 0.23
TRIM38O00635 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TRIM38O00635 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 56.6 ms