Protein–RNA interactions for Protein: Q9Y2D8

SSX2IP, Afadin- and alpha-actinin-binding protein, humanhuman

Predictions only

Length 614 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX2IPQ9Y2D8 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
SSX2IPQ9Y2D8 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SSX2IPQ9Y2D8 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SSX2IPQ9Y2D8 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC17.6■□□□□ 0.41
SSX2IPQ9Y2D8 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
SSX2IPQ9Y2D8 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC17.6■□□□□ 0.41
SSX2IPQ9Y2D8 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SSX2IPQ9Y2D8 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SSX2IPQ9Y2D8 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SSX2IPQ9Y2D8 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SSX2IPQ9Y2D8 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SSX2IPQ9Y2D8 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
SSX2IPQ9Y2D8 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
SSX2IPQ9Y2D8 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SSX2IPQ9Y2D8 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC17.6■□□□□ 0.41
SSX2IPQ9Y2D8 HNRNPA3P1-201ENST00000401429 1139 ntBASIC17.6■□□□□ 0.41
SSX2IPQ9Y2D8 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SSX2IPQ9Y2D8 HNRNPA3P5-201ENST00000455201 833 ntBASIC17.6■□□□□ 0.41
SSX2IPQ9Y2D8 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC17.6■□□□□ 0.41
SSX2IPQ9Y2D8 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SSX2IPQ9Y2D8 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC17.6■□□□□ 0.41
SSX2IPQ9Y2D8 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC17.6■□□□□ 0.41
SSX2IPQ9Y2D8 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC17.6■□□□□ 0.41
SSX2IPQ9Y2D8 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC17.6■□□□□ 0.41
SSX2IPQ9Y2D8 RAB34-223ENST00000636154 730 ntTSL 2 BASIC17.6■□□□□ 0.41
SSX2IPQ9Y2D8 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SSX2IPQ9Y2D8 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SSX2IPQ9Y2D8 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC17.6■□□□□ 0.41
SSX2IPQ9Y2D8 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
SSX2IPQ9Y2D8 AC006277.1-201ENST00000624348 1610 ntBASIC17.6■□□□□ 0.41
SSX2IPQ9Y2D8 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC17.6■□□□□ 0.41
SSX2IPQ9Y2D8 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
SSX2IPQ9Y2D8 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SSX2IPQ9Y2D8 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SSX2IPQ9Y2D8 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
SSX2IPQ9Y2D8 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
SSX2IPQ9Y2D8 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SSX2IPQ9Y2D8 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC17.6■□□□□ 0.41
SSX2IPQ9Y2D8 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SSX2IPQ9Y2D8 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
SSX2IPQ9Y2D8 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SSX2IPQ9Y2D8 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
SSX2IPQ9Y2D8 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
SSX2IPQ9Y2D8 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SSX2IPQ9Y2D8 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
SSX2IPQ9Y2D8 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC17.59■□□□□ 0.41
SSX2IPQ9Y2D8 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SSX2IPQ9Y2D8 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
SSX2IPQ9Y2D8 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SSX2IPQ9Y2D8 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SSX2IPQ9Y2D8 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SSX2IPQ9Y2D8 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC17.59■□□□□ 0.41
SSX2IPQ9Y2D8 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
SSX2IPQ9Y2D8 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
SSX2IPQ9Y2D8 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC17.59■□□□□ 0.41
SSX2IPQ9Y2D8 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC17.59■□□□□ 0.41
SSX2IPQ9Y2D8 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
SSX2IPQ9Y2D8 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SSX2IPQ9Y2D8 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SSX2IPQ9Y2D8 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SSX2IPQ9Y2D8 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
SSX2IPQ9Y2D8 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC17.59■□□□□ 0.41
SSX2IPQ9Y2D8 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC17.59■□□□□ 0.41
SSX2IPQ9Y2D8 TSSK5P-201ENST00000423978 907 ntBASIC17.59■□□□□ 0.41
SSX2IPQ9Y2D8 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC17.59■□□□□ 0.41
SSX2IPQ9Y2D8 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC17.59■□□□□ 0.41
SSX2IPQ9Y2D8 CRB3P1-201ENST00000449338 276 ntBASIC17.59■□□□□ 0.41
SSX2IPQ9Y2D8 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SSX2IPQ9Y2D8 SATB1-217ENST00000493952 626 ntTSL 3 BASIC17.59■□□□□ 0.41
SSX2IPQ9Y2D8 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SSX2IPQ9Y2D8 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC17.59■□□□□ 0.41
SSX2IPQ9Y2D8 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
SSX2IPQ9Y2D8 AL138828.2-201ENST00000615812 383 ntBASIC17.59■□□□□ 0.41
SSX2IPQ9Y2D8 SPDYE12P-201ENST00000618416 771 ntBASIC17.59■□□□□ 0.41
SSX2IPQ9Y2D8 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
SSX2IPQ9Y2D8 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SSX2IPQ9Y2D8 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
SSX2IPQ9Y2D8 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SSX2IPQ9Y2D8 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
SSX2IPQ9Y2D8 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC17.59■□□□□ 0.41
SSX2IPQ9Y2D8 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
SSX2IPQ9Y2D8 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC17.59■□□□□ 0.41
SSX2IPQ9Y2D8 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
SSX2IPQ9Y2D8 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SSX2IPQ9Y2D8 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SSX2IPQ9Y2D8 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC17.58■□□□□ 0.41
SSX2IPQ9Y2D8 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC17.58■□□□□ 0.41
SSX2IPQ9Y2D8 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SSX2IPQ9Y2D8 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
SSX2IPQ9Y2D8 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
SSX2IPQ9Y2D8 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SSX2IPQ9Y2D8 AC046158.3-201ENST00000624947 2558 ntBASIC17.58■□□□□ 0.41
SSX2IPQ9Y2D8 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
SSX2IPQ9Y2D8 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SSX2IPQ9Y2D8 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SSX2IPQ9Y2D8 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.41
SSX2IPQ9Y2D8 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC17.58■□□□□ 0.4
SSX2IPQ9Y2D8 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
SSX2IPQ9Y2D8 CETN4P-206ENST00000642099 2168 ntBASIC17.58■□□□□ 0.4
SSX2IPQ9Y2D8 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms